View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_11 (Length: 372)
Name: NF5029_low_11
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 32825912 - 32825558
Alignment:
| Q |
18 |
cagtaagattcttgatgtagtagtactagtactagtannnnnnnnggagaacagttttgatagacaactgaatcacaagatatcgtagaagatgaaatat |
117 |
Q |
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| T |
32825912 |
cagtaagattcttgatgtagtagtactagtaatagtattttttttggagaacagttttgatagacaactgaatcacaagatatcgtagaagatgaaatat |
32825813 |
T |
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| Q |
118 |
ggtgtgtcagcgttatgcatggcattggcatattgatttagtcaatgtcttttgtgtcgtaaagactatgggaagccaatttagatttacttcctagaga |
217 |
Q |
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| T |
32825812 |
ggtgtgtcagcgttatgcatggcattggcatattgatttagtcaatgtcttttgtgtcgtaaagactatgggaagccaatttagattcacttcctagaga |
32825713 |
T |
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| Q |
218 |
attcataaagatatcaaaatcaagagggtctttgtttaacaagtaagtatgtgttgctgctaaaatgtattctatatatacctctatatacacattctca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32825712 |
attcataaagatatcaaaatcaagagggtctttgtttaacaagtaagtatgggttgctgctaaaatgtattctatatatatctctatatacacattctca |
32825613 |
T |
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| Q |
318 |
aaggcagttccacgaaagatatgctcaagaattgtgtcatgtacacaagaataat |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32825612 |
aaggcagttccacgaaagatatgctcaagaattgtgtcatgtacacaagaataat |
32825558 |
T |
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