View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_13 (Length: 328)
Name: NF5029_low_13
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 476963 - 477241
Alignment:
| Q |
29 |
aatgattctgacggatttaggtgctcgtagtttatttgtctctagtcgaaaatttgtagtttaaagcttgaagtgttaatcttaaattttagtgggtcta |
128 |
Q |
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| T |
476963 |
aatgattctgacggatttaggtgctcgtagtttatttgtctctagtcgaaaatttgtagtttaaagcttgaagtgttaatcttaaattttagtgggtcta |
477062 |
T |
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| Q |
129 |
gtgatcaattttgcctaaaatactagggacgcgacatgtagtagaatattacaatcgaaatttgtaaatgttgtatataattttatcaaaaattcaaata |
228 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
477063 |
gtgatcaattttgcctaaaatactagggaagcgacatgtagtagaatattacaatcgaaatttgtaaatgttgtatataattttatcaaaaattcaaata |
477162 |
T |
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| Q |
229 |
acatctctattttaaatttcaagtgatgaattagaacattctttaacataaaggtgcgtgcattaatgcttttgcatta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
477163 |
acatctctattttaaatttcaagtgatgaattagaacattctttaacataaaggtgcgtgcattaatgcttttgcatta |
477241 |
T |
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