View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_16 (Length: 304)
Name: NF5029_low_16
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_16 |
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| [»] scaffold0098 (1 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 38935653 - 38935392
Alignment:
| Q |
15 |
tatacgtaactgccaaaagttcaggatttataaagtttcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttagttttcat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38935653 |
tatacgtaactgccaaaagttcaggatttataaagtctcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttggttttcat |
38935554 |
T |
|
| Q |
115 |
aaatgaaagagtttaagtatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaacaacatatatgtaactgctaattgacata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38935553 |
aaatgaaagagtttaagtatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaacaacgtatatgtaactgctaattgacata |
38935454 |
T |
|
| Q |
215 |
tatgtaacaacaaattatgatttgtgactccttccattgccaattctttcatttccatcaac |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935453 |
tatgtaacaacaaattatgatttgtgactccttccattgccaattctttcatttccatcaac |
38935392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 11381456 - 11381510
Alignment:
| Q |
132 |
tatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaac |
186 |
Q |
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||||||||||||||||||||||| || |||||||||||| | ||||||| ||||| |
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| T |
11381456 |
tatttagtgtgacataaatatttttaaacatgtaactgccacaatccttcaaaac |
11381510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 14863141 - 14863321
Alignment:
| Q |
15 |
tatacgtaactgccaaaagttcaggatttataaagtttcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttagttttcat |
114 |
Q |
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|
|||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| || |||||| |||||||| |
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| T |
14863141 |
tatacgtaactgccaaaatttcaagatttataaagtcttaactatgaagggttttgtgtgctaattttggttttatctaaaaatgtcatttggttttcat |
14863240 |
T |
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| Q |
115 |
aaatgaaagagtttaagtatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaacaacatatat |
195 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
14863241 |
aaatgaaagaatttaagtatttagtgtgacataaatatttgtatagatgtaactgctaaaacccttgaaaacaacatatat |
14863321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 14863360 - 14863471
Alignment:
| Q |
194 |
atgtaactgctaattgacatatatgtaacaacaaattatgatttgtgactcc-ttccattgccaattctttcatttccatcaactaggcagggtttatat |
292 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
14863360 |
atgtaaccgctaattgacatatatgtaacaacaaattatgatttgtgactcccttccattgccaattctttcattttcatcaactaggtagggtttatat |
14863459 |
T |
|
| Q |
293 |
attactcggact |
304 |
Q |
| |
|
|||||||||||| |
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| T |
14863460 |
attactcggact |
14863471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 40971138 - 40971330
Alignment:
| Q |
15 |
tatacgtaactgccaaaa-gttcaggatttataaagtttcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttagttttca |
113 |
Q |
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|||| ||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||| ||||| ||| |||||||||||| ||||||||| ||||||| |
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| T |
40971138 |
tatatgtaactgccaaaaagttaaggatttttaaagtctcaactatgaagggttttgtgcgctaacttttgttttctctaaaaatatcatttggttttca |
40971237 |
T |
|
| Q |
114 |
ta--------aatgaaagagtttaagtatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaacaacatatatgta |
198 |
Q |
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| |||||||| |||| ||||||||||||||||||||||||| || | |||||||||| ||||||||| ||||||||||| ||||| |
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| T |
40971238 |
aagttcatacaatgaaagggttttagtatttagtgtgacataaatatttttaaatatgtaactgccaaaatccttcaaaacaacataaatgta |
40971330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 27256836 - 27256982
Alignment:
| Q |
60 |
gaagggttttgtgtgctaattttggttttctctaaacatatcatttagttttcata--------aatgaaagagtttaagtatttagtgtgacataaata |
151 |
Q |
| |
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||||| ||||||| ||||| ||| |||||||||||| ||||||||| ||||||| | |||||||| ||| | ||| |||||||||||||||| |
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| T |
27256836 |
gaaggattttgtgcgctaacttttgttttctctaaaaatatcatttggttttcaaagttcatacaatgaaagggttataatatctagtgtgacataaata |
27256935 |
T |
|
| Q |
152 |
tttgtatacatgtaactgctaaaatccttgaaaacaacatatatgta |
198 |
Q |
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||| || |||||||||||| | ||||||| | ||||||||||||||| |
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| T |
27256936 |
tttttaaacatgtaactgccacaatccttcagaacaacatatatgta |
27256982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 26377046 - 26377100
Alignment:
| Q |
132 |
tatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaac |
186 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||||||| ||||| |
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|
| T |
26377046 |
tatttagtgtgacataaatatttttaaacatgtaactgccacaatccttcaaaac |
26377100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 46140506 - 46140452
Alignment:
| Q |
132 |
tatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaac |
186 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||||||| ||||| |
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| T |
46140506 |
tatttagtgtgacataaatatttttaaacatgtaactgccacaatccttcaaaac |
46140452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 46287 - 46464
Alignment:
| Q |
29 |
aaaagttcaggatttataaagtttcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttagttttcata--------aatga |
120 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||| ||||| ||| |||||||||||| |||||||| ||||||| | ||||| |
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|
| T |
46287 |
aaaagttaaggatttttaaagtctcaactatgaagggttttgtgcgctaacttttgttttctctaaaattatcatttggttttcaaagttcatacaatga |
46386 |
T |
|
| Q |
121 |
aagagtttaagtatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaacaacatatatgta |
198 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| || | |||||||| | ||||||||| ||||||||||| ||||| |
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| T |
46387 |
aagagttttagtatttagcgtgacataaatatttttaaatatgtaactaccaaaatccttcaaaacaacataaatgta |
46464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 42126739 - 42126861
Alignment:
| Q |
156 |
tatacatgtaactgctaaaatccttgaaaacaacatatatgtaactgctaattgacatatatgtaacaacaaattatgatttgtgactccttccattgcc |
255 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||||| | |||| |||||||||||||||||| |||| |
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| T |
42126739 |
tatatatgtaactgccaaaattcttgaaaacaacgcatatgtaactgctaattggcatatatgtaactgcgaattgtgatttgtgactccttcccctgcc |
42126838 |
T |
|
| Q |
256 |
aattctttcatttccatcaacta |
278 |
Q |
| |
|
||||||||| ||||| ||||||| |
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| T |
42126839 |
aattctttcttttccttcaacta |
42126861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 42126267 - 42126331
Alignment:
| Q |
52 |
tcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttagttttcataaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
42126267 |
tcaactatgaagggttttgtgcgctaattttggttttctctaaa-atatcatttgcttttcataaa |
42126331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 1221 - 1167
Alignment:
| Q |
132 |
tatttagtgtgacataaatatttgtatacatgtaactgctaaaatccttgaaaac |
186 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||||||| ||||| |
|
|
| T |
1221 |
tatttagtgtgacataaatatttttaaacatgtaactgccacaatccttcaaaac |
1167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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