View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_17 (Length: 302)
Name: NF5029_low_17
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 31613754 - 31613900
Alignment:
| Q |
32 |
gaagaagaagaagaaattcaagaaagttattgttatgaagattctatagagaaagatcatttaagagattctataatttatggtggagaagctcttgtat |
131 |
Q |
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| T |
31613754 |
gaagaagaagaagaaattcaagaaagttattgttatgaagattctatagagaaagatcatttagtagctgatataatttatggtggagaagctcttgtat |
31613853 |
T |
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| Q |
132 |
ttcttcatagtaacaatgagtctcaaaggaatgattctttttcttat |
178 |
Q |
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| T |
31613854 |
ttcttcatagtaacaatgagtctcaaaggaatgattctttttcttat |
31613900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 31613945 - 31614024
Alignment:
| Q |
208 |
gtttatcactcctcaagatagcttcattgaagagttttcttcagtagaaaatttttcaactgaaaatttgtatgttcatc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31613945 |
gtttatcactcctcaagatagcttcattgaagagttttcttcagaagaaaatttttcaactgaaaatttgtatgttcatc |
31614024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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