View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_18 (Length: 297)
Name: NF5029_low_18
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 16199871 - 16199577
Alignment:
| Q |
1 |
agtgataaaacaacttttttcggtatatgcaaagttgnnnnnnnggctaaaattataatgtttatttacaacatgatcctttttgttttcctatttctta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
16199871 |
agtgataaaacaacttttttcggtatatgcaaagttgaaaaaaaggctaaaattataatgtttgtttacaacatgatcctttttgtttccctatttcttg |
16199772 |
T |
|
| Q |
101 |
ttgtagtcgacggtgaaagtaagcccataataattgtttttatcttatatacccaatattttcctcatttttagta--------------ttcttattat |
186 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||| | |
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| T |
16199771 |
ttgtagtcgacggtgaaagtaagcctataataattgtttttatcttatatacccaatattttcttcatttttaataatatttctttattgttattatttt |
16199672 |
T |
|
| Q |
187 |
acattacagaagagtgtgactgtgttgccgattgtatatacaaatatcccacactacgcgatctagttgtgaaatgcattgaaggttattgtaag |
281 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16199671 |
acattacagaagagtgtgcgtgtgttgccgattgtatatacaaatatcccacactacgcgatctagttgtgaaatgcatcgaaggttattgtaag |
16199577 |
T |
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