View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5029_low_2 (Length: 552)
Name: NF5029_low_2
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 31 - 540
Target Start/End: Complemental strand, 476864 - 476357
Alignment:
| Q |
31 |
ataaatatttaaaattatcataaattctaagacgattggtgataatcttagaaattgaaaattatatatatttattttctgttgttttgagcgaattgat |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
476864 |
ataaatatttaaaattatcataaattctaagacgattggtgataatcttagaaattgaaaattatatat--ttattttatgttgttttgagcgaattgat |
476767 |
T |
|
| Q |
131 |
atcaattgagtcattatctcaattgtaaaaatgacaaggatcattaacttccactactaagagacgatgactgatctatacnnnnnnngacaatgtttat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
476766 |
atcaattgagtcattatctcaattgtaaaaatgacaaggatcattaacctccactattaaaagacgatggctgatctata-aaaaaaagacaatgtttat |
476668 |
T |
|
| Q |
231 |
cgttgttgaaattttgaacattttttaaatatcgatccatgataaacaacttataaa-atatggcacattaaaatttgtctaatctaaacatgaactcga |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
476667 |
cgttgttgaaattttgaacattttttaaatatcgatccatgataaaccacttataaagatattgcacattaaaatttgtctaatctaaacatgaactcga |
476568 |
T |
|
| Q |
330 |
tagagacaggctaaaaaattttgcaaatcttaaacgcaattgattttgtcaaagattgtccgtttgaaataaaagtttannnnnnnaacgatagtttgaa |
429 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
476567 |
tagagacaggctaaaaaaatttgcaaatcttaaacgcaattgattttgtcaaagattgtccgtttgaaataaaagttta-ttttttaacgatagtttgaa |
476469 |
T |
|
| Q |
430 |
taaaagttggtgtagttaaaccttttacctttga-nnnnnnnnattgtaaattttaaacaaggaaagggagaggacaccaagataaagccatgctccact |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
476468 |
taaaagttggtgtagttaaaccttttaccttttatttttttttattgtaaattttaaacaaggaaagggagaggacaccaagataaagccctgctccact |
476369 |
T |
|
| Q |
529 |
tgcttacatatt |
540 |
Q |
| |
|
|||||||||||| |
|
|
| T |
476368 |
tgcttacatatt |
476357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 51046809 - 51046887
Alignment:
| Q |
99 |
tatttattttctgttgttttgagcgaattgatatcaattgagtcattatctcaattgtaaaaatgacaaggatcattaa |
177 |
Q |
| |
|
|||||| ||| ||||||||| | | |||||||| ||||| | ||||||| ||||| |||||||| | |||||||||||| |
|
|
| T |
51046809 |
tatttagtttttgttgttttaatcaaattgataacaattaaatcattatttcaatcgtaaaaataagaaggatcattaa |
51046887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 16828400 - 16828342
Alignment:
| Q |
141 |
tcattatctcaattgtaaaaatgacaaggatcattaacttccactactaagagacgatg |
199 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||| || |||| |||||||||||| |
|
|
| T |
16828400 |
tcattattccaattgtaaaaatgacgaggaccattaacatctactattaagagacgatg |
16828342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University