View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029_low_21 (Length: 289)

Name: NF5029_low_21
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029_low_21
NF5029_low_21
[»] chr1 (4 HSPs)
chr1 (1-271)||(15828603-15828862)
chr1 (78-126)||(15830305-15830353)
chr1 (78-126)||(15832033-15832081)
chr1 (78-126)||(15833760-15833808)
[»] chr5 (2 HSPs)
chr5 (27-126)||(37328448-37328546)
chr5 (24-119)||(37224735-37224826)
[»] scaffold0754 (1 HSPs)
scaffold0754 (78-126)||(3569-3617)
[»] scaffold0563 (6 HSPs)
scaffold0563 (78-126)||(420-468)
scaffold0563 (78-126)||(1880-1928)
scaffold0563 (78-126)||(3649-3697)
scaffold0563 (78-126)||(7237-7285)
scaffold0563 (78-126)||(8999-9047)
scaffold0563 (78-126)||(10102-10150)
[»] scaffold0543 (1 HSPs)
scaffold0543 (78-126)||(334-382)
[»] scaffold0492 (1 HSPs)
scaffold0492 (78-126)||(462-510)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 15828603 - 15828862
Alignment:
Q  1 agtgaagtaactgatccaaaatttgctgctagccaacattgttctagaccattaatgttatttggttccacacttactttgtaattaaaaacaaatcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15828603 agtgaagtaactgatccaaaatttgctgctagccaacattgttctagaccattaatgttatttggttccacactttctttgtaattaaaaacaaatcatg 15828702  T
Q  101 tatgcaaatttcaataaaccattatctaataataaggtttacaaccattgcagaatacaactatattatgtttcacatttgagtttcatttcaatttgag 200  Q
    ||||||||||||||||||           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15828703 tatgcaaatttcaataaa-----------taataaggtttacaaccatttcagaatacaactatattatgtttcacatttgagtttcatttcaatttaag 15828791  T
Q  201 ccatactccatgtatatgtttgaatcgtgttctaaacatgcctatgttatgtttcattttctggataagtt 271  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||||    
T  15828792 ccatacttcatgtatatgtttgaattgtgttttaaacatgcctttgttatgtttcattttttggataagtt 15828862  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 15830305 - 15830353
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  15830305 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 15830353  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 15832033 - 15832081
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  15832033 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 15832081  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 15833760 - 15833808
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  15833760 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 15833808  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 37328448 - 37328546
Alignment:
Q  27 tgctagccaacattgttctagaccattaatgttatttggttccacacttactttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    ||||||| ||| ||| | ||||||| | |||  ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  37328448 tgctagctaaccttggtatagaccaatcatgcaatttggttccaaactttctttgtaattaaaaa-aaatcatgtatgcaaatttcaacaaaccattatc 37328546  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 37224826 - 37224735
Alignment:
Q  24 tgctgctagccaacattgttctagaccattaatgttatttggttccacacttactttgtaattaaaaacaaatcatgtatgcaaatttcaataaac 119  Q
    |||| ||||| ||||||| | |||| || | |||||||||||||||||||||    |||||||||||||||||||||| | ||||  |||||||||    
T  37224826 tgctcctagctaacattggtatagatcagtcatgttatttggttccacactt----tgtaattaaaaacaaatcatgtttccaaacatcaataaac 37224735  T

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Target: scaffold0754 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 3617 - 3569
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  3617 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 3569  T

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Target: scaffold0563 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 468 - 420
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  468 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 420  T

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Target: scaffold0563; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 1880 - 1928
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  1880 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 1928  T

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Target: scaffold0563; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 3649 - 3697
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  3649 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 3697  T

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Target: scaffold0563; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 7285 - 7237
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  7285 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 7237  T

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Target: scaffold0563; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 9047 - 8999
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  9047 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 8999  T

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Target: scaffold0563; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 10150 - 10102
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  10150 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 10102  T

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Target: scaffold0543 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 334 - 382
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  334 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 382  T

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Target: scaffold0492 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 510 - 462
Alignment:
Q  78 tttgtaattaaaaacaaatcatgtatgcaaatttcaataaaccattatc 126  Q
    |||||||||| ||||||||| | || |||||||||||| ||||||||||    
T  510 tttgtaattacaaacaaatcttctaagcaaatttcaattaaccattatc 462  T

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