View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029_low_24 (Length: 251)

Name: NF5029_low_24
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029_low_24
NF5029_low_24
[»] chr4 (20 HSPs)
chr4 (19-251)||(25103780-25104007)
chr4 (34-99)||(24850673-24850737)
chr4 (22-95)||(16645122-16645195)
chr4 (23-88)||(17946501-17946565)
chr4 (34-99)||(42722623-42722688)
chr4 (40-105)||(43458607-43458672)
chr4 (25-105)||(20421768-20421847)
chr4 (22-70)||(52950111-52950159)
chr4 (22-70)||(53354561-53354609)
chr4 (34-77)||(36145261-36145304)
chr4 (34-67)||(8064844-8064877)
chr4 (34-95)||(38075437-38075498)
chr4 (40-105)||(55005358-55005423)
chr4 (34-70)||(1446855-1446891)
chr4 (40-100)||(2559306-2559366)
chr4 (22-70)||(3574480-3574528)
chr4 (34-82)||(20532455-20532503)
chr4 (34-70)||(29895816-29895852)
chr4 (22-70)||(42722413-42722461)
chr4 (40-96)||(48317327-48317383)
[»] chr5 (15 HSPs)
chr5 (22-96)||(19839326-19839400)
chr5 (47-95)||(16755061-16755109)
chr5 (22-70)||(20255394-20255442)
chr5 (22-70)||(35561852-35561900)
chr5 (25-95)||(13664260-13664330)
chr5 (34-82)||(14588663-14588711)
chr5 (37-95)||(18262667-18262725)
chr5 (34-72)||(42861264-42861302)
chr5 (37-70)||(4016304-4016337)
chr5 (22-63)||(35813032-35813073)
chr5 (34-70)||(1538456-1538492)
chr5 (34-70)||(19572749-19572785)
chr5 (22-70)||(21375376-21375424)
chr5 (34-70)||(28857153-28857189)
chr5 (34-70)||(42086352-42086388)
[»] chr8 (15 HSPs)
chr8 (22-119)||(3418547-3418644)
chr8 (22-95)||(33401833-33401906)
chr8 (37-118)||(43032881-43032962)
chr8 (22-70)||(583840-583888)
chr8 (22-70)||(9860029-9860077)
chr8 (37-105)||(30903329-30903396)
chr8 (34-105)||(8141095-8141166)
chr8 (40-86)||(35496307-35496353)
chr8 (22-56)||(39969949-39969983)
chr8 (34-112)||(43027291-43027369)
chr8 (40-77)||(14666123-14666160)
chr8 (22-82)||(13831048-13831107)
chr8 (34-70)||(18374038-18374074)
chr8 (22-70)||(33935769-33935817)
chr8 (34-70)||(45521196-45521232)
[»] chr6 (6 HSPs)
chr6 (22-119)||(13036038-13036135)
chr6 (23-72)||(11142629-11142678)
chr6 (22-70)||(5333032-5333080)
chr6 (34-78)||(30410465-30410509)
chr6 (22-70)||(32157201-32157249)
chr6 (34-70)||(5253269-5253305)
[»] chr2 (18 HSPs)
chr2 (22-95)||(38962762-38962835)
chr2 (34-87)||(41187856-41187909)
chr2 (23-99)||(4080352-4080428)
chr2 (22-105)||(12864213-12864296)
chr2 (40-95)||(15234113-15234168)
chr2 (25-100)||(34346324-34346399)
chr2 (34-88)||(6358197-6358251)
chr2 (22-95)||(18649060-18649133)
chr2 (40-77)||(21286461-21286498)
chr2 (25-70)||(33005775-33005820)
chr2 (22-82)||(2784945-2785004)
chr2 (34-70)||(14169655-14169691)
chr2 (22-70)||(16325619-16325667)
chr2 (44-88)||(18846277-18846321)
chr2 (22-82)||(26805308-26805368)
chr2 (40-72)||(28525507-28525539)
chr2 (34-70)||(38005426-38005462)
chr2 (22-74)||(39806919-39806971)
[»] chr3 (16 HSPs)
chr3 (22-82)||(24506683-24506742)
chr3 (22-95)||(3136729-3136801)
chr3 (40-72)||(43330785-43330817)
chr3 (21-95)||(29135912-29135986)
chr3 (22-72)||(50405638-50405688)
chr3 (40-73)||(2668082-2668115)
chr3 (40-77)||(4638171-4638208)
chr3 (34-95)||(45877453-45877514)
chr3 (40-88)||(928606-928654)
chr3 (36-88)||(6286131-6286182)
chr3 (34-70)||(26043836-26043872)
chr3 (34-70)||(35315980-35316016)
chr3 (34-70)||(41630559-41630595)
chr3 (22-70)||(48342044-48342092)
chr3 (22-58)||(49082860-49082896)
chr3 (34-70)||(49198375-49198411)
[»] chr7 (6 HSPs)
chr7 (34-100)||(27028276-27028342)
chr7 (33-70)||(18785696-18785733)
chr7 (34-119)||(36619300-36619385)
chr7 (34-70)||(13095885-13095921)
chr7 (34-70)||(45697236-45697272)
chr7 (34-70)||(48804710-48804746)
[»] scaffold0209 (1 HSPs)
scaffold0209 (22-70)||(12600-12648)
[»] chr1 (13 HSPs)
chr1 (34-82)||(10336529-10336577)
chr1 (34-105)||(10422778-10422849)
chr1 (34-77)||(49078132-49078175)
chr1 (40-98)||(17642057-17642115)
chr1 (40-82)||(18649405-18649447)
chr1 (40-82)||(42710191-42710233)
chr1 (40-70)||(50503414-50503444)
chr1 (34-119)||(5855498-5855583)
chr1 (22-95)||(18708575-18708648)
chr1 (34-95)||(32142893-32142954)
chr1 (22-63)||(34719808-34719849)
chr1 (37-70)||(34878015-34878048)
chr1 (22-67)||(41696633-41696678)
[»] scaffold0170 (1 HSPs)
scaffold0170 (40-119)||(9823-9902)
[»] scaffold0291 (1 HSPs)
scaffold0291 (34-70)||(6882-6918)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 25103780 - 25104007
Alignment:
Q  19 agagactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcc-tgaaaattgaatccagtatttcccaaatacattcttgtaagg 117  Q
    |||||||||||  | ||||| ||||||||||||||||||||||| |     |||||| ||||||| |||| ||||||| |||| ||||||||||||||||    
T  25103780 agagactaatccaactcatgcgtagaggcatgcgcactggtcaaat-----ttctccctgaaaatcgaattcagtatt-cccagatacattcttgtaagg 25103873  T
Q  118 agattcttaccgttgaagctcaaacagtagagagaaatgtcatcttatctaacaagtcattaaaataataagatttgttacgtgaattgttgctcaccta 217  Q
    || ||||| || |||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  25103874 agcttcttgccattgaagccaaagcagtagagagaaatgtcatcttatctaacaagtcattaaaatcatatgatttgttacgtgaattgttgctcaccta 25103973  T
Q  218 gcgaatatactctagaaatttcgtttaatctctt 251  Q
    ||||||||||||||||||||||||||||||||||    
T  25103974 gcgaatatactctagaaatttcgtttaatctctt 25104007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 24850673 - 24850737
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttccc 99  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||  |||||||||    
T  24850673 tcatgcgtagaggcatgcgcactggtcaagtgttg-ttcccctgataattgaatctggtatttccc 24850737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 16645195 - 16645122
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||| || |||||||||||||||||| |||||| |||| ||||||  |||||||||| ||| || |||||    
T  16645195 gactaatcagactcatgtgtagaggcatgcacactggccaagcgttgttcttcctgaaaatcgaacccggtatt 16645122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 17946565 - 17946501
Alignment:
Q  23 actaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatc 88  Q
    |||||||||| ||||||||||| ||||||||||||||||||  ||| ||| ||||||||| |||||    
T  17946565 actaatctgactcatgtgtagaagcatgcgcactggtcaagaattg-ttcccctgaaaatcgaatc 17946501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 42722623 - 42722688
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttccc 99  Q
    ||||| ||||||||||||||||||| |||| |||||| ||||||  ||||||| || |||||||||    
T  42722623 tcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaattgaacccggtatttccc 42722688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 43458672 - 43458607
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    ||||||||||||||||||| |||| ||| || ||||||  ||| |||||||||||| |||||||||    
T  43458672 gtagaggcatgcgcactggccaagcgttcttcctcctgggaatcgaatccagtattccccaaatac 43458607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 20421847 - 20421768
Alignment:
Q  25 taatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    |||||||  ||||| ||||||||||||||||||| ||||||||||| | |||| |||| ||| |||||||| |||| ||||    
T  20421847 taatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaa-ccagtattccccagatac 20421768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 52950159 - 52950111
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||||| ||||||||||||| |||||||||||| |||| ||||||    
T  52950159 gactaatctggttcatgtgtagagtcatgcgcactggccaagcgttgtt 52950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 53354609 - 53354561
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| |||| ||| |||||||||||||||||||| ||||||||||    
T  53354609 gactaatccgatttatgcgtagaggcatgcgcactggttaagtgttgtt 53354561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 36145261 - 36145304
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctg 77  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||    
T  36145261 tcatgtgtagaggcatgcgcactgatcaagcgttgtttcccctg 36145304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 8064844 - 8064877
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgtt 67  Q
    ||||| ||||||||||||||||||||||||||||    
T  8064844 tcatgcgtagaggcatgcgcactggtcaagtgtt 8064877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 38075498 - 38075437
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    ||||| ||||||||||||||||||| |||| |||||||| ||||| ||| ||| || |||||    
T  38075498 tcatgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcgaacccggtatt 38075437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 55005358 - 55005423
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    ||||||||||||||| |||||||| |||||||| ||||  ||| |||| | |||||||||| ||||    
T  55005358 gtagaggcatgcgcaatggtcaagcgttgtttcccctgcgaatcgaattcggtatttcccagatac 55005423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 1446891 - 1446855
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  1446891 tcatgcgtagaggcatgcgcactggccaagtgttgtt 1446855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 2559366 - 2559306
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttccca 100  Q
    ||||||||||||||||||| |||| |||||| |||||  |||| |||||| ||||| ||||    
T  2559366 gtagaggcatgcgcactggccaagcgttgttcctcctagaaatcgaatccggtattcccca 2559306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 3574480 - 3574528
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || || || ||||||||||||||||||| |||||||||||    
T  3574480 gactaatccgactcgtgcgtagaggcatgcgcactggccaagtgttgtt 3574528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 20532455 - 20532503
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    ||||| ||||||||||||||||||| |||| |||||| |||||| ||||    
T  20532455 tcatgcgtagaggcatgcgcactggccaagcgttgttcctcctggaaat 20532503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 29895852 - 29895816
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  29895852 tcatgcgtagaggcatgcgcactggccaagtgttgtt 29895816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 42722413 - 42722461
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || |||||  |||||| |||||||||||||||||||||||    
T  42722413 gactaatccgactcatgcatagaggtatgcgcactggtcaagtgttgtt 42722461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 48317327 - 48317383
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtattt 96  Q
    |||||||||| | |||||  |||| |||||| ||||||||||| |||||||||||||    
T  48317327 gtagaggcatacacactgaccaagcgttgttcctcctgaaaatcgaatccagtattt 48317383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 19839400 - 19839326
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtattt 96  Q
    ||||||||||| || | ||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||    
T  19839400 gactaatctgactcgtatgtagaggcatgcgcactgatcaagcgttgttcctcctgaaaattgaatccggtattt 19839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 16755109 - 16755061
Alignment:
Q  47 catgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  16755109 catgcgcactggccaagtgttgtttctcctgaaaatcgaacccagtatt 16755061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 20255442 - 20255394
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  20255442 gactaatccgactcatgcgtagaggcatgcgcactggtcaagtgttgtt 20255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 35561852 - 35561900
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  35561852 gactaatctggctcatgtgtagaggcatgcgcactggtcaggtgttgtt 35561900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 13664330 - 13664260
Alignment:
Q  25 taatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||  ||||| ||||||||||||||||||| ||||||||||| | ||||| ||| |||||| |||||    
T  13664330 taatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgataatcgaatccggtatt 13664260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14588663 - 14588711
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    ||||| |||||||||||||||||||||||| ||| || |||||||||||    
T  14588663 tcatgcgtagaggcatgcgcactggtcaagcgttattcctcctgaaaat 14588711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 18262667 - 18262725
Alignment:
Q  37 tgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||||| |||||||||||||||| |||||| | ||||||||| ||| || |||||    
T  18262667 tgtgtagaggtatgcgcactggtcaagcgttgttccccctgaaaatagaacccggtatt 18262725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 42861264 - 42861302
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttc 72  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  42861264 tcatgcgtagaggcatgcgcactggccaagtgttgtttc 42861302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 4016304 - 4016337
Alignment:
Q  37 tgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||||||||||||||||| |||||||||||    
T  4016304 tgtgtagaggcatgcgcactggccaagtgttgtt 4016337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 35813032 - 35813073
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaag 63  Q
    |||||||| || |||||||||||| |||||||||||||||||    
T  35813032 gactaatccgactcatgtgtagagacatgcgcactggtcaag 35813073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 1538492 - 1538456
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  1538492 tcatgcgtagaggcatgcgcactggccaagtgttgtt 1538456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 19572785 - 19572749
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  19572785 tcatgcgtagaggcatgcgcactggccaagtgttgtt 19572749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 21375424 - 21375376
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || ||||| ||||| ||||||||||||||||| |||||||    
T  21375424 gactaatccgactcatgcgtagaagcatgcgcactggtcaaatgttgtt 21375376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 28857189 - 28857153
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  28857189 tcatgcgtagaggcatgcgcactggccaagtgttgtt 28857153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 42086388 - 42086352
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  42086388 tcatgcgtagaggcatgcgcactggtcaagcgttgtt 42086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 3418547 - 3418644
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttgtaaggag 119  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||||||||||| ||||| ||||| ||| ||  |||| |||| |||| | |||| ||||||    
T  3418547 gactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgttcctcctaaaaatcgaacccgatattccccagatacgtccttggaaggag 3418644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 33401833 - 33401906
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||| || ||||| |||||||||||| |||||||||||||||||| | ||||||||| ||| || |||||    
T  33401833 gactaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttccccctgaaaatcgaacccggtatt 33401906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 43032962 - 43032881
Alignment:
Q  37 tgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttgtaagga 118  Q
    |||||||||||||||||||||| |||| |||||| | ||||  ||| ||||||  ||||||||| ||||||| ||| |||||    
T  43032962 tgtgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaatccgatatttcccagatacatttttggaagga 43032881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 583888 - 583840
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||||    
T  583888 gactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 9860029 - 9860077
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||  |||||||||||||||||| |||||| |||||||||||    
T  9860029 gactaatctggctcatgtgtagaggcatgcacactggccaagtgttgtt 9860077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 30903396 - 30903329
Alignment:
Q  37 tgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    ||||||| |||||||||||||||||||  ||||||| ||||||||| |||||| ||||| ||| |||||    
T  30903396 tgtgtagcggcatgcgcactggtcaagcattgtttc-cctgaaaatcgaatccggtattccccgaatac 30903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 8141166 - 8141095
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    ||||| ||||||||||||||||||| |||| |||||||| |||| |||| ||| || ||||| ||| |||||    
T  8141166 tcatgcgtagaggcatgcgcactggccaagcgttgtttcccctggaaatcgaacccggtattccccgaatac 8141095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 35496307 - 35496353
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaa 86  Q
    ||||||||||||||||||  |||||||||||||  ||||||||||||    
T  35496307 gtagaggcatgcgcactgaccaagtgttgtttcctctgaaaattgaa 35496353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 39969949 - 39969983
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcact 56  Q
    ||||||||||| |||||||||||||||||||||||    
T  39969949 gactaatctgactcatgtgtagaggcatgcgcact 39969983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 43027369 - 43027291
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttg 112  Q
    ||||| ||||||||||||||| ||| |||  |||||| ||||||  ||| ||| |||||||| ||||||||| ||||||    
T  43027369 tcatgcgtagaggcatgcgcattggacaatcgttgttcctcctgggaatcgaacccagtattccccaaatacgttcttg 43027291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 14666123 - 14666160
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctg 77  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  14666123 gtagaggcatgcgcactggccaagtgttgtttcccctg 14666160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 13831048 - 13831107
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    |||||||| || | ||||||||||||||||||| |||||||  ||||||| ||||||||||    
T  13831048 gactaatccgacttatgtgtagaggcatgcgcattggtcaaacgttgttt-tcctgaaaat 13831107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 18374074 - 18374038
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  18374074 tcatgcgtagaggcatgcgcactggtcaagcgttgtt 18374038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 33935769 - 33935817
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || ||||| ||| ||||||||||||||| |||||||||||    
T  33935769 gactaatccgactcatgcgtataggcatgcgcactggccaagtgttgtt 33935817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 45521232 - 45521196
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  45521232 tcatgcgtagaggcatgcgcactgatcaagtgttgtt 45521196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 13036038 - 13036135
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttgtaaggag 119  Q
    ||||||||||  ||||| ||||||||||||||||||| ||||||||||| | ||||||||| ||| ||  |||| ||| ||||| | |||| ||||||    
T  13036038 gactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcgaacccgatattccccgaatacgtccttggaaggag 13036135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 11142678 - 11142629
Alignment:
Q  23 actaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttc 72  Q
    |||||||||| ||||| |||||||||||||||||||||||  ||||||||    
T  11142678 actaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 5333080 - 5333032
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||  |||||||||||| |||||||||||| |||||||||||    
T  5333080 gactaatctggctcatgtgtagagacatgcgcactggacaagtgttgtt 5333032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 30410509 - 30410465
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctga 78  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||    
T  30410509 tcatgcgtagaggcatgcgcactggttaagtgttgttcctcctga 30410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 32157201 - 32157249
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||  ||||| ||||||| |||||||||||||||||||||||    
T  32157201 gactaatctggctcatgcgtagaggtatgcgcactggtcaagtgttgtt 32157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 5253269 - 5253305
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  5253269 tcatgcgtagaggcatgcgcactggccaagtgttgtt 5253305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 38962835 - 38962762
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||| | |||||| ||||||||||||||||||| |||| |||||| ||||||||||| ||| || |||||    
T  38962835 gactaatccggttcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgaaaatcgaacccggtatt 38962762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 41187909 - 41187856
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaat 87  Q
    ||||| |||||||||||||||||||||||| ||||||| |||| | ||||||||    
T  41187909 tcatgcgtagaggcatgcgcactggtcaagcgttgtttttcctaagaattgaat 41187856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 4080352 - 4080428
Alignment:
Q  23 actaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttccc 99  Q
    ||||||||||||| || || |||||||||| |||||||||| ||||||| |  | | ||| ||||||||||||||||    
T  4080352 actaatctgattcgtgcgtggaggcatgcgtactggtcaagcgttgttttttataagaatcgaatccagtatttccc 4080428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 12864296 - 12864213
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    ||||||||||  ||||| | ||||||||||||||||  ||||||||||| | |||| |||| |||||| ||||| ||| |||||    
T  12864296 gactaatctggctcatgcgcagaggcatgcgcactgaccaagtgttgttccccctggaaatcgaatccggtattccccgaatac 12864213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 15234113 - 15234168
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    ||||||||||||||||||||||||||||||| | ||||| ||| ||| | ||||||    
T  15234113 gtagaggcatgcgcactggtcaagtgttgttccccctgagaatcgaacctagtatt 15234168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 34346324 - 34346399
Alignment:
Q  25 taatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttccca 100  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||| | ||||| |||  || |||||||| ||||    
T  34346324 taatctgactcatgcgtagaggcatgcacactggccaagtgttgttccccctgataatcaaacccagtattcccca 34346399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 6358197 - 6358251
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatc 88  Q
    ||||| ||||||||||||||||||| ||||||||||| | |||| |||| |||||    
T  6358197 tcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaatc 6358251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 18649060 - 18649133
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||| || ||||| ||||||||||||||||||  ||| | ||||| ||||||| ||| |||||| |||||    
T  18649060 gactaatccgactcatgcgtagaggcatgcgcactgcccaaatattgttcctcctgagaatcgaatccggtatt 18649133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 21286498 - 21286461
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctg 77  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  21286498 gtagaggcatgcgcactggtcaagcgttgtttcgcctg 21286461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 33005820 - 33005775
Alignment:
Q  25 taatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||  ||||| ||||||||||||||||||| |||||||||||    
T  33005820 taatctgcctcatgcgtagaggcatgcgcactggccaagtgttgtt 33005775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 2785004 - 2784945
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| | ||||||| |||||||||    
T  2785004 gactaatctgactcatgcgtagaggcatgcgcactgaccaaatcttgtttc-cctgaaaat 2784945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 14169655 - 14169691
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  14169655 tcatgcgtagagacatgcgcactggtcaagtgttgtt 14169691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16325667 - 16325619
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||  ||||| |||||||||||| |||||| |||||||||||    
T  16325667 gactaatctggctcatgcgtagaggcatgcacactggccaagtgttgtt 16325619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 18846277 - 18846321
Alignment:
Q  44 aggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatc 88  Q
    ||||||||||||||  |||| |||||||| |||||||||||||||    
T  18846277 aggcatgcgcactgcccaagcgttgtttcccctgaaaattgaatc 18846321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 26805368 - 26805308
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    |||||||| || ||||| ||||||||||| ||||||| |||  || |||||||||||||||    
T  26805368 gactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttctcctgaaaat 26805308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 28525507 - 28525539
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttc 72  Q
    ||||||||||||||||||| |||||||||||||    
T  28525507 gtagaggcatgcgcactggccaagtgttgtttc 28525539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 38005462 - 38005426
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  38005462 tcatgtgtagaggcatgcgcactggccaagcgttgtt 38005426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 39806919 - 39806971
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctc 74  Q
    |||||||| || || |||||||||||||||||||||| |||  ||||||||||    
T  39806919 gactaatccgactcgtgtgtagaggcatgcgcactggccaaacgttgtttctc 39806971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 24506683 - 24506742
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    ||||||||||| ||||| ||||||||||| |||||||||||| |||||||| |||||||||    
T  24506683 gactaatctgactcatgcgtagaggcatgtgcactggtcaagcgttgtttc-cctgaaaat 24506742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 3136729 - 3136801
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    |||||||| || ||||| ||||||||||||||||||  ||||||||| ||| ||||||||| |||||| |||||    
T  3136729 gactaatccgactcatgcgtagaggcatgcgcactgcccaagtgttg-ttcccctgaaaatcgaatccggtatt 3136801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 43330785 - 43330817
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttc 72  Q
    |||||||||||||||||||||||||||||||||    
T  43330785 gtagaggcatgcgcactggtcaagtgttgtttc 43330817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 29135986 - 29135912
Alignment:
Q  21 agactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    ||||||||| |  ||||| ||||||||||||||||||| ||||||||||| | ||||  ||| |||||| |||||    
T  29135986 agactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaatccggtatt 29135912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 50405638 - 50405688
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttc 72  Q
    |||||||| || || || |||||||||||||||||||||||| ||||||||    
T  50405638 gactaatccgactcgtgcgtagaggcatgcgcactggtcaagcgttgtttc 50405688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 2668115 - 2668082
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttct 73  Q
    ||||||||||||||||||| ||||||||||||||    
T  2668115 gtagaggcatgcgcactggccaagtgttgtttct 2668082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 4638208 - 4638171
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctg 77  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  4638208 gtagaggtatgcgcactggtcaagcgttgtttctcctg 4638171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 45877514 - 45877453
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    ||||| ||||||||||| ||||||| ||||||||||||| |||| |||| ||| || |||||    
T  45877514 tcatgcgtagaggcatgtgcactggccaagtgttgtttcccctggaaatcgaacccggtatt 45877453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 928654 - 928606
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatc 88  Q
    |||| |||||||||||||||||||||||||| | ||||| ||| |||||    
T  928654 gtagcggcatgcgcactggtcaagtgttgttccccctgagaatcgaatc 928606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 6286182 - 6286131
Alignment:
Q  36 atgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatc 88  Q
    ||||||||||||||||||||| ||||||||||||| || ||| |||| |||||    
T  6286182 atgtgtagaggcatgcgcact-gtcaagtgttgttccttctggaaatcgaatc 6286131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 26043872 - 26043836
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  26043872 tcatgcgtagaggcatgcgcactggccaagtgttgtt 26043836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 35316016 - 35315980
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  35316016 tcatgcgtagaggcatgcgcactggccaagtgttgtt 35315980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 41630559 - 41630595
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  41630559 tcatgtgtagaggcatgcgcactgggcaagcgttgtt 41630595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 48342092 - 48342044
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||||| |||||| ||||||||||||||||| | |||| ||||||    
T  48342092 gactaatctggttcatgcgtagaggcatgcgcactagccaagcgttgtt 48342044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 49082896 - 49082860
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactgg 58  Q
    |||||||||||||| |||||||| |||||||||||||    
T  49082896 gactaatctgattcgtgtgtagatgcatgcgcactgg 49082860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 49198411 - 49198375
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  49198411 tcatgcgtagaggcatgcgcactggccaagtgttgtt 49198375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 27028342 - 27028276
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttccca 100  Q
    ||||||||||||||||||||||||| ||||||||||| | |||| |||| ||| |  ||||||||||    
T  27028342 tcatgtgtagaggcatgcgcactggccaagtgttgttccccctggaaatcgaacctggtatttccca 27028276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 18785733 - 18785696
Alignment:
Q  33 ttcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  18785733 ttcatgcgtagaggcatgcgcactggccaagtgttgtt 18785696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 36619300 - 36619385
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttgtaaggag 119  Q
    ||||| |||||||||||| |||||| ||||||||||| | ||||  ||| ||| || ||||| ||||||||| | |||| ||||||    
T  36619300 tcatgcgtagaggcatgcacactggacaagtgttgttccccctgggaatcgaacccggtattccccaaatacgtccttgcaaggag 36619385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 13095921 - 13095885
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  13095921 tcatgcgtagaggcatgcgcactggccaagtgttgtt 13095885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 45697236 - 45697272
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  45697236 tcatgcgtagaggcatgcgcactgatcaagtgttgtt 45697272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 48804746 - 48804710
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  48804746 tcatgcgtagaggcatgcgcactggccaagtgttgtt 48804710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 12648 - 12600
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||| || ||||| |||||||||||||||||||||||| ||||||    
T  12648 gactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10336577 - 10336529
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    ||||| |||||||||||||||||||||||| |||||| | |||||||||    
T  10336577 tcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgaaaat 10336529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 10422849 - 10422778
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatac 105  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||  |||| ||| || ||||| ||| |||||    
T  10422849 tcatgcgtagaggcatgcgcactggccaagtgttgttcctcctagaaatcgaacccggtattccccgaatac 10422778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 49078175 - 49078132
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctg 77  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  49078175 tcatgcgtagaggcatgcgcactggccaagtgttgtttcccctg 49078132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 17642057 - 17642115
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcc 98  Q
    ||||||||||||||||||| ||||||||||| | ||||  ||| ||| |||||||||||    
T  17642057 gtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccagtatttcc 17642115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 18649405 - 18649447
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    |||||||||||||||||||||||| |||||| | |||||||||    
T  18649405 gtagaggcatgcgcactggtcaagcgttgttccccctgaaaat 18649447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 42710191 - 42710233
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaat 82  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  42710191 gtagaggcatgcgcactggccaagtattgtttcccctgaaaat 42710233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 50503414 - 50503444
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||||||||||||||||||||||||||    
T  50503414 gtagaggcatgcgcactggtcaagtgttgtt 50503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 5855583 - 5855498
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttgtaaggag 119  Q
    ||||| ||||||||||||||||||| |||| |||||| ||||||  ||| ||| || ||||| ||| ||||| | |||| ||||||    
T  5855583 tcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtccttggaaggag 5855498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 18708575 - 18708648
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    ||||||||||  ||||||||||||||||||||||| | ||||  ||| ||| |||| |||| ||| ||||||||    
T  18708575 gactaatctggctcatgtgtagaggcatgcgcactagccaagcattgcttcccctggaaatcgaacccagtatt 18708648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 32142893 - 32142954
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatt 95  Q
    ||||| ||| ||||||||||||||| ||||||||||| | ||||||||| ||| || |||||    
T  32142893 tcatgcgtaaaggcatgcgcactggccaagtgttgttccccctgaaaatcgaacccggtatt 32142954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 34719849 - 34719808
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaag 63  Q
    ||||||||||| || || ||||||||||||||||||||||||    
T  34719849 gactaatctgactcgtgcgtagaggcatgcgcactggtcaag 34719808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 34878048 - 34878015
Alignment:
Q  37 tgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    |||||||||||||||||||||| |||||||||||    
T  34878048 tgtgtagaggcatgcgcactggccaagtgttgtt 34878015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 41696633 - 41696678
Alignment:
Q  22 gactaatctgattcatgtgtagaggcatgcgcactggtcaagtgtt 67  Q
    |||||||||||||| || |||||||||| | |||||||||||||||    
T  41696633 gactaatctgattcgtgcgtagaggcatacacactggtcaagtgtt 41696678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 9902 - 9823
Alignment:
Q  40 gtagaggcatgcgcactggtcaagtgttgtttctcctgaaaattgaatccagtatttcccaaatacattcttgtaaggag 119  Q
    ||||||||||||||||||| |||| |||||| | |||| |||| |||||| ||||| | || |||||| |||| ||||||    
T  9902 gtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatacatccttggaaggag 9823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 6918 - 6882
Alignment:
Q  34 tcatgtgtagaggcatgcgcactggtcaagtgttgtt 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  6918 tcatgcgtagaggcatgcgcactggccaagtgttgtt 6882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University