View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5029_low_26 (Length: 248)
Name: NF5029_low_26
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_26 |
 | |
|
| [»] scaffold0302 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 1236461 - 1236699
Alignment:
| Q |
6 |
aacacagagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatct |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236461 |
aacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatct |
1236560 |
T |
|
| Q |
106 |
gtgatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgt |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236561 |
gtgatccttcatttattaacaagtcggctatttgattggcttccttttttatatgaacaaagcccacatccatcaaactctacatgttttttcattttgt |
1236660 |
T |
|
| Q |
206 |
tgctcaagaatctcagattaaatggacacccatcactac |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1236661 |
tgctcaagaatttcagattaaatggacacccatcactac |
1236699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 1183244 - 1183037
Alignment:
| Q |
39 |
caaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttcatttattaacaagtcagctattt |
138 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| ||||| | | ||| ||| | || |||| |||| | ||||| |
|
|
| T |
1183244 |
caaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatccgtttatgaccctactattgctaactagtcggttattt |
1183145 |
T |
|
| Q |
139 |
gattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaatctcagattaaatggacacccat |
238 |
Q |
| |
|
|||| |||||| | ||||||||||||||||| | ||||| |||||||| ||| |||||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
1183144 |
gattagcttccctatttatatgaacaaagcccatatccaccaaactctgcat--tttttcattttgttgctcaagaatcttatattacatggacacccat |
1183047 |
T |
|
| Q |
239 |
cactacaccc |
248 |
Q |
| |
|
|||||||||| |
|
|
| T |
1183046 |
cactacaccc |
1183037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 1194111 - 1193974
Alignment:
| Q |
17 |
cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttca |
116 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| ||||||| ||| || |||| ||||||| | | |
|
|
| T |
1194111 |
cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccacccatttgtgatcatact |
1194012 |
T |
|
| Q |
117 |
tttattaacaagtcagctatttgattggcttccttttt |
154 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
1194011 |
tttgctaacaagttggctatttgatttgcttccttttt |
1193974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 248
Target Start/End: Complemental strand, 20405 - 20198
Alignment:
| Q |
41 |
aaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttcatttattaacaagtcagctatttga |
140 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||||||||||||| |||| |||| | || ||||| | |||| |||| |||| | ||||||| |
|
|
| T |
20405 |
aaaacagaactcggcagacctgcattatccacattgaaacctagatattctattgccatcagttcgtaatcctacttttactaacgagtcggttatttga |
20306 |
T |
|
| Q |
141 |
ttggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaatctcagattaaatggacacccatca |
240 |
Q |
| |
|
|| |||||||| |||| || ||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20305 |
ttagcttccttgtttaaattaacaaagaccacatccatcaaactctgcatgtttttacattttgttgctcaagaatctcagattaaatgaacacccatca |
20206 |
T |
|
| Q |
241 |
ctacaccc |
248 |
Q |
| |
|
|||||||| |
|
|
| T |
20205 |
ctacaccc |
20198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University