View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_28 (Length: 244)
Name: NF5029_low_28
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 14863437 - 14863657
Alignment:
| Q |
4 |
catcaactaggtagggtttatatattactcggactaaacaacacaacttttctgtcttaaaccaattcttcatcaagctcatattagttagtgtctttct |
103 |
Q |
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| T |
14863437 |
catcaactaggtagggtttatatattactcggactaaacaacacaacttttatgtcttaaaccaattcttcatcaagctcatattag----tgtctttct |
14863532 |
T |
|
| Q |
104 |
tggtatccgttttctcctttgctcataccagaaaatggttcaagcattatttgctcataccaccgtccacttggactaaacaacatcttgttttttacct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
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| T |
14863533 |
tggtatccgttttctcctttgctcataccagaaaatggttcaagcattatttgctcattaaaccgtccacttggactaaacaacatcctgtttttttcct |
14863632 |
T |
|
| Q |
204 |
tccatctacttgctacattctatct |
228 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
14863633 |
tccatctacatgctacattctatct |
14863657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 38933356 - 38933153
Alignment:
| Q |
21 |
ttatatattactcggactaaacaacacaacttttctgtcttaaaccaattcttcatcaagctcatattagttagtgtctttcttggtatccgttttctcc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38933356 |
ttatatattactcggactaaacaacacaacttttctgtcttaaaccaattcttcatcaagctcatattagt----gtctttcttggtatccgttttctcc |
38933261 |
T |
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| Q |
121 |
tttgctcataccagaaaatggttcaagcattatttgctcataccaccgtccacttggactaaacaacatcttgttttttaccttccatctacttgctaca |
220 |
Q |
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| T |
38933260 |
tttgctcataccagaaaatggttcaagcattatttgctcataccactgtccacttggactaaacaacatcctgtttttttccttccatctacttgctaca |
38933161 |
T |
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| Q |
221 |
ttctatct |
228 |
Q |
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|||||||| |
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| T |
38933160 |
ttctatct |
38933153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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