View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_3 (Length: 533)
Name: NF5029_low_3
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 260 - 516
Target Start/End: Original strand, 39826175 - 39826431
Alignment:
| Q |
260 |
ctcccatggtctcatttataagggatatttgagacaataaaaattaaatgaatttagattaaatatatcaacttttactaacccaaatatcttgtataaa |
359 |
Q |
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| T |
39826175 |
ctcccatggtctcatttataagggatatttgagacaataacaattaaatgagtttagattaaatatatcaatttttactaacccaaatatcttgtataaa |
39826274 |
T |
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| Q |
360 |
tagaatccatgtgagtagtagtattttaagaataatattacgaaatgaggtaaaattagctaaaatttacttcatttatctgatctatggattaatttat |
459 |
Q |
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| T |
39826275 |
tagaatccatgtgagtagtagtattttaagaataatattacgaaatgaggtaaaattagctaaaatttacttcatttatctgatctatggattaatttat |
39826374 |
T |
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| Q |
460 |
agacattgagtgttttcttaatagacattaattaacattgcgtaccacctaccatgt |
516 |
Q |
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| T |
39826375 |
agacattgagtgttttcttaatagacattaattaacattgcgtaccacccaccatgt |
39826431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 39825923 - 39826130
Alignment:
| Q |
21 |
gaagttaagaaataattttttataataaatacttgctattattgaaattcttaacatgtgctttatgggtacaagttagcatgactcatat--------- |
111 |
Q |
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| T |
39825923 |
gaagttaagaattaaatttttataataaatatttgctattaatgaaattcttaacatgtgtcttatgggcacacgttagcatgactcatataagaaaaaa |
39826022 |
T |
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| Q |
112 |
----gaaataagaattagtgttagctaattttatttaaatttttaacattataataaattgatttcctaaattattctttatgagaagttgataacttat |
207 |
Q |
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| T |
39826023 |
aaatgaaataagaattagtgttagctaattttatttaaatttttaatattataataaattgatttcctaaattattctttatgagaagttgataacttat |
39826122 |
T |
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| Q |
208 |
tctataag |
215 |
Q |
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| T |
39826123 |
tctataag |
39826130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 47762790 - 47762707
Alignment:
| Q |
22 |
aagttaagaaataattttttataataaatacttgctattattgaaattcttaacatgtgctttatgggtacaagttagcatgac |
105 |
Q |
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| T |
47762790 |
aagttaaaaattaaattttcataataaatatttcctattaaaggaattcttaacatgtgctctaagggcacaagttagcatgac |
47762707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 18618606 - 18618546
Alignment:
| Q |
21 |
gaagttaagaaataattttttataataaatacttgctattattgaaattcttaacatgtgc |
81 |
Q |
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| T |
18618606 |
gaagttaagaattaatttttcataataaatatttgctattaatagaattcttaatatgtgc |
18618546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 50404262 - 50404214
Alignment:
| Q |
33 |
taattttttataataaatacttgctattattgaaattcttaacatgtgc |
81 |
Q |
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| T |
50404262 |
taatttttttcaataaatacttgctattattagaatccttaacatgtgc |
50404214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 39734642 - 39734596
Alignment:
| Q |
33 |
taattttttataataaatacttgctattattgaaattcttaacatgt |
79 |
Q |
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| T |
39734642 |
taattttttataataaatatttactattaataaaattcttaacatgt |
39734596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 13854150 - 13854223
Alignment:
| Q |
33 |
taattttttataataaatacttgctattattgaaattcttaacatgtgctttatgggta-caagttagcatgac |
105 |
Q |
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| T |
13854150 |
taatttttcataataaatatttgctattaatagaattcttaacatgtgccttaagggcaccaagttagtatgac |
13854223 |
T |
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