View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_30 (Length: 239)
Name: NF5029_low_30
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_30 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1236865 - 1237089
Alignment:
| Q |
1 |
tctcacacaatgaattcctcagcagaccacctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236865 |
tctcacacaatgaattcctcagcagaccacctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagg |
1236964 |
T |
|
| Q |
101 |
gggacaccgtactgctgacaatctactaccaacaatctctttcaatgttttaatctcttgaattttatacaaatggaccgcgtgat--acacacacacat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1236965 |
gggacaccgtactgctgacaatctactaccaacaatctctttccatgttttaatctcttgaattttatacaaatggaccgcgtgatacacacacacacat |
1237064 |
T |
|
| Q |
199 |
tctatgaagggttggacacttgaga |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
1237065 |
tctatgaagggttggacacttgaga |
1237089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 897593 - 897370
Alignment:
| Q |
1 |
tctcacacaatgaattcctcagcagaccacctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagg |
100 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||| | ||||||||||||| ||||||||||| ||||| |
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| T |
897593 |
tctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggcttccctttcgatgatctatccacattccatttccaaacattttggggagg |
897494 |
T |
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| Q |
101 |
gggacaccgtactgctgacaatctactacc-aacaatctctttcaatgttttaatctcttgaattttatacaaatggaccgcgtgatacacacacacatt |
199 |
Q |
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| T |
897493 |
gggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgtt |
897394 |
T |
|
| Q |
200 |
ctatgaagggttggacacttgaga |
223 |
Q |
| |
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||| |||||||| || |||||||| |
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| T |
897393 |
ctacgaagggtttgagacttgaga |
897370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 1193823 - 1193635
Alignment:
| Q |
1 |
tctcacacaatgaattcctcagcagaccacctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagg |
100 |
Q |
| |
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|||||||||| ||||||||||||| || ||| |||| |||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
1193823 |
tctcacacaaagaattcctcagcacacaaccaatacacgcaactcccagcttcccttttgacgatccatccacattccatttcaaaacattttgtggagg |
1193724 |
T |
|
| Q |
101 |
gggacaccgtactgctgacaatctactaccaacaatctctttcaatgttttaatctcttgaattttatacaaa---tggaccgcgtgatacacacacaca |
197 |
Q |
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|||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
1193723 |
gggacaccatactg--------------ccaacaatctttttccatgttttaatctcttgaattttatacaaatattggaccgcgtgatacacacacata |
1193638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 1182853 - 1182669
Alignment:
| Q |
30 |
cctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagggggacaccgtactgctgacaatctactac |
129 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
1182853 |
cctatacgcgcagctcccggcttccctttcgacgatctatccacattccatttcaaaacattttgtggagggggacaccatactg--------------c |
1182768 |
T |
|
| Q |
130 |
caacaatctctttcaatgttttaatctcttgaattttatacaaa-----tggaccgcgtgatacacacacacattctatgaagggttggacacttgaga |
223 |
Q |
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||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
1182767 |
caacaatatttttccatgttttaatctcttgaattttatacaaatatattggaccgcgtgatacacacacatattctatgaagggtttgagacttgaga |
1182669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 20070 - 19866
Alignment:
| Q |
1 |
tctcacacaatgaattcctcagcagaccacctatacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagg |
100 |
Q |
| |
|
|||| ||||||||| |||||| || ||||||||||| ||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||| |
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| T |
20070 |
tctctcacaatgaaatcctcaacacaccacctatacctgcagctcccagcttccctttcaacgatccatccacattccattaccaaacattttgtggagg |
19971 |
T |
|
| Q |
101 |
gggacaccgtactgctgacaatctactaccaacaatctctttcaatgttttaatctcttgaattttatacaaatggaccgcgtgatacacacacacattc |
200 |
Q |
| |
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|||||| |||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||| |||| |
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| T |
19970 |
gggacaacgtattgctgaca--------------atctctttccatgttttaatctcttgagttttatacaaatggaccacgtgat----acacatattc |
19889 |
T |
|
| Q |
201 |
tatgaagggttggacacttgaga |
223 |
Q |
| |
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||||||||||| || |||||||| |
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| T |
19888 |
tatgaagggtttgagacttgaga |
19866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 20256954 - 20257092
Alignment:
| Q |
39 |
gcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagggggacaccgtactgctgacaatctactaccaacaatct |
138 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |
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| T |
20256954 |
gcagctcccggcttccctttcaacgatccatccacattccattaccaaacattttgtggagggggacaccatattgctgacaatcta------------- |
20257040 |
T |
|
| Q |
139 |
ctttcaatgttttaatctcttgaattttatacaaatggaccgcgtgatacaca |
191 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
20257041 |
-tttccatgttttaatctcttgaattttatacaaatggaccacgtgatacaca |
20257092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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