View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5029_low_31 (Length: 238)

Name: NF5029_low_31
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5029_low_31
NF5029_low_31
[»] chr8 (39 HSPs)
chr8 (1-100)||(30912465-30912564)
chr8 (1-94)||(42197344-42197437)
chr8 (1-89)||(29705460-29705548)
chr8 (1-96)||(36743390-36743485)
chr8 (1-95)||(2547094-2547188)
chr8 (1-95)||(9241650-9241744)
chr8 (2-99)||(20148859-20148956)
chr8 (1-89)||(2165877-2165965)
chr8 (1-89)||(11582864-11582952)
chr8 (1-91)||(29800862-29800952)
chr8 (1-97)||(30660648-30660744)
chr8 (1-96)||(45397414-45397508)
chr8 (1-95)||(31384762-31384856)
chr8 (1-94)||(26125733-26125825)
chr8 (1-95)||(3743869-3743963)
chr8 (1-98)||(1375640-1375737)
chr8 (1-72)||(5755001-5755072)
chr8 (31-97)||(34304916-34304981)
chr8 (1-95)||(42295293-42295386)
chr8 (142-191)||(29114098-29114147)
chr8 (142-211)||(41454857-41454926)
chr8 (31-95)||(10678060-10678124)
chr8 (142-206)||(13906661-13906725)
chr8 (31-95)||(33629901-33629965)
chr8 (143-206)||(41845464-41845527)
chr8 (1-95)||(40528542-40528636)
chr8 (142-191)||(1032566-1032615)
chr8 (170-211)||(31153508-31153549)
chr8 (31-96)||(35181644-35181709)
chr8 (142-193)||(38063973-38064024)
chr8 (142-208)||(30466675-30466741)
chr8 (150-208)||(38289268-38289326)
chr8 (142-191)||(10161960-10162009)
chr8 (96-129)||(12957922-12957955)
chr8 (142-191)||(23139070-23139119)
chr8 (142-191)||(44828483-44828532)
chr8 (143-191)||(22652680-22652728)
chr8 (156-204)||(38544961-38545009)
chr8 (151-211)||(39104612-39104672)
[»] chr5 (19 HSPs)
chr5 (1-95)||(41334571-41334665)
chr5 (1-97)||(25914902-25914998)
chr5 (1-97)||(7617231-7617327)
chr5 (1-96)||(5257093-5257188)
chr5 (1-95)||(18034080-18034174)
chr5 (1-102)||(2614550-2614651)
chr5 (1-98)||(39122261-39122358)
chr5 (1-96)||(33801567-33801662)
chr5 (1-70)||(22512403-22512472)
chr5 (1-89)||(38470677-38470765)
chr5 (31-95)||(30622627-30622691)
chr5 (31-94)||(32473303-32473366)
chr5 (142-211)||(31250143-31250212)
chr5 (142-211)||(38503287-38503356)
chr5 (145-211)||(43227865-43227931)
chr5 (142-206)||(12375447-12375511)
chr5 (151-203)||(15696212-15696264)
chr5 (145-211)||(17077360-17077426)
chr5 (1-55)||(39122381-39122435)
[»] chr3 (38 HSPs)
chr3 (1-98)||(36150228-36150325)
chr3 (1-95)||(40808963-40809057)
chr3 (1-95)||(53581766-53581860)
chr3 (1-98)||(42394324-42394421)
chr3 (1-96)||(46941151-46941246)
chr3 (1-96)||(52629926-52630021)
chr3 (1-95)||(24688310-24688404)
chr3 (1-95)||(40480847-40480941)
chr3 (1-95)||(54237194-54237288)
chr3 (1-97)||(1078316-1078412)
chr3 (1-97)||(54246054-54246150)
chr3 (1-96)||(25413779-25413874)
chr3 (1-98)||(47190931-47191028)
chr3 (1-95)||(45126836-45126930)
chr3 (4-87)||(42100789-42100872)
chr3 (1-95)||(27748661-27748746)
chr3 (1-98)||(11064627-11064724)
chr3 (31-100)||(19148896-19148965)
chr3 (142-211)||(25165436-25165505)
chr3 (5-98)||(29556864-29556956)
chr3 (31-95)||(9434252-9434316)
chr3 (142-223)||(39739270-39739351)
chr3 (142-205)||(11483609-11483672)
chr3 (33-95)||(54429173-54429235)
chr3 (142-191)||(2259153-2259202)
chr3 (31-100)||(51757721-51757789)
chr3 (142-206)||(30162653-30162717)
chr3 (143-191)||(34225192-34225240)
chr3 (142-206)||(46798578-46798642)
chr3 (57-97)||(53273599-53273639)
chr3 (31-98)||(4190170-4190237)
chr3 (142-185)||(16141409-16141452)
chr3 (156-191)||(45510793-45510828)
chr3 (142-191)||(33528255-33528304)
chr3 (142-191)||(46247256-46247305)
chr3 (150-191)||(47864640-47864681)
chr3 (151-191)||(22602253-22602293)
chr3 (142-206)||(29226322-29226386)
[»] chr2 (35 HSPs)
chr2 (1-97)||(30838730-30838826)
chr2 (1-94)||(42849768-42849861)
chr2 (1-98)||(19047255-19047352)
chr2 (1-96)||(4764633-4764728)
chr2 (1-100)||(43490304-43490403)
chr2 (1-95)||(1750512-1750606)
chr2 (13-95)||(16096858-16096940)
chr2 (1-95)||(43335671-43335765)
chr2 (1-89)||(12302167-12302255)
chr2 (1-89)||(42026867-42026955)
chr2 (31-99)||(34895645-34895713)
chr2 (38-100)||(18491840-18491902)
chr2 (1-98)||(34817681-34817778)
chr2 (31-100)||(41281877-41281946)
chr2 (31-99)||(6518398-6518466)
chr2 (31-95)||(11825562-11825626)
chr2 (142-208)||(33482675-33482741)
chr2 (1-62)||(13780676-13780737)
chr2 (27-96)||(39149201-39149269)
chr2 (31-100)||(43114685-43114754)
chr2 (31-95)||(966742-966806)
chr2 (31-95)||(12415368-12415432)
chr2 (31-95)||(12427428-12427492)
chr2 (144-191)||(11069395-11069442)
chr2 (143-206)||(27463561-27463624)
chr2 (31-99)||(12531567-12531635)
chr2 (143-191)||(16403522-16403570)
chr2 (31-95)||(16804096-16804160)
chr2 (31-95)||(16843378-16843442)
chr2 (142-189)||(25553197-25553244)
chr2 (145-191)||(34107494-34107540)
chr2 (31-100)||(4299323-4299392)
chr2 (142-191)||(31149151-31149200)
chr2 (142-187)||(43027151-43027196)
chr2 (97-129)||(41365853-41365885)
[»] chr7 (44 HSPs)
chr7 (1-98)||(16180262-16180359)
chr7 (1-95)||(41861774-41861868)
chr7 (1-89)||(32029731-32029819)
chr7 (1-100)||(5810827-5810926)
chr7 (1-91)||(5015493-5015583)
chr7 (2-99)||(44326277-44326374)
chr7 (1-89)||(24000926-24001014)
chr7 (1-89)||(42538345-42538433)
chr7 (1-95)||(26898310-26898404)
chr7 (1-96)||(4638106-4638201)
chr7 (1-108)||(43343519-43343626)
chr7 (1-96)||(44416841-44416936)
chr7 (1-89)||(27393174-27393262)
chr7 (1-89)||(42972950-42973038)
chr7 (1-95)||(43317541-43317635)
chr7 (1-77)||(38160505-38160581)
chr7 (1-97)||(45326118-45326214)
chr7 (1-99)||(35069819-35069917)
chr7 (1-95)||(10573847-10573941)
chr7 (1-89)||(9216399-9216487)
chr7 (33-104)||(47279623-47279694)
chr7 (1-95)||(5194139-5194233)
chr7 (31-96)||(40237047-40237112)
chr7 (142-211)||(40273817-40273886)
chr7 (142-191)||(42338297-42338346)
chr7 (31-99)||(31408537-31408605)
chr7 (142-223)||(24029981-24030062)
chr7 (156-193)||(34322072-34322109)
chr7 (142-191)||(48433760-48433809)
chr7 (143-191)||(12166079-12166127)
chr7 (31-99)||(31513415-31513483)
chr7 (143-191)||(42554631-42554679)
chr7 (142-193)||(26456053-26456104)
chr7 (144-191)||(31793466-31793513)
chr7 (146-189)||(43440689-43440732)
chr7 (142-188)||(23824644-23824690)
chr7 (31-97)||(27535137-27535203)
chr7 (33-99)||(33385001-33385067)
chr7 (96-138)||(45890791-45890833)
chr7 (150-223)||(23602278-23602351)
chr7 (96-137)||(27234634-27234675)
chr7 (142-191)||(27454007-27454056)
chr7 (142-191)||(38378215-38378264)
chr7 (56-96)||(38160469-38160509)
[»] chr4 (52 HSPs)
chr4 (1-98)||(27550407-27550504)
chr4 (1-99)||(1771170-1771268)
chr4 (1-95)||(43514594-43514688)
chr4 (1-98)||(55966251-55966348)
chr4 (1-97)||(28982728-28982824)
chr4 (1-96)||(23036078-23036173)
chr4 (96-223)||(25104277-25104404)
chr4 (1-95)||(27893750-27893844)
chr4 (1-98)||(43735840-43735937)
chr4 (1-96)||(31681000-31681095)
chr4 (1-95)||(33703239-33703333)
chr4 (1-95)||(35017830-35017924)
chr4 (1-97)||(27864662-27864758)
chr4 (4-95)||(51512173-51512264)
chr4 (1-95)||(25051791-25051885)
chr4 (1-97)||(41878504-41878593)
chr4 (1-95)||(23204686-23204780)
chr4 (2-96)||(56215805-56215899)
chr4 (1-90)||(41848069-41848158)
chr4 (1-92)||(48463361-48463452)
chr4 (1-77)||(39631199-39631275)
chr4 (27-95)||(43949709-43949777)
chr4 (1-100)||(28988571-28988669)
chr4 (31-96)||(19880082-19880147)
chr4 (142-211)||(51974743-51974812)
chr4 (1-89)||(12497054-12497142)
chr4 (1-97)||(21687104-21687200)
chr4 (31-95)||(55272284-55272348)
chr4 (142-189)||(8716442-8716489)
chr4 (1-91)||(45490225-45490315)
chr4 (1-96)||(27316619-27316715)
chr4 (31-99)||(35037133-35037200)
chr4 (143-211)||(45847956-45848024)
chr4 (31-97)||(17619058-17619124)
chr4 (142-191)||(16556447-16556496)
chr4 (142-191)||(23448969-23449018)
chr4 (142-191)||(27862881-27862930)
chr4 (57-98)||(32728511-32728552)
chr4 (142-191)||(36993037-36993086)
chr4 (142-191)||(40407011-40407060)
chr4 (31-100)||(46827609-46827678)
chr4 (142-211)||(50815703-50815772)
chr4 (31-91)||(712088-712148)
chr4 (31-95)||(48435487-48435551)
chr4 (5-68)||(41327478-41327541)
chr4 (48-98)||(960748-960798)
chr4 (1-83)||(46412389-46412471)
chr4 (145-206)||(13210199-13210260)
chr4 (142-191)||(31261754-31261803)
chr4 (142-191)||(39387474-39387523)
chr4 (142-211)||(46283118-46283187)
chr4 (155-191)||(22096441-22096477)
[»] chr6 (28 HSPs)
chr6 (1-97)||(3213498-3213594)
chr6 (1-97)||(21280027-21280123)
chr6 (1-100)||(7367647-7367746)
chr6 (1-91)||(7292845-7292935)
chr6 (1-99)||(26669913-26670011)
chr6 (1-96)||(21293584-21293679)
chr6 (1-95)||(30736080-30736174)
chr6 (1-94)||(13743130-13743223)
chr6 (1-94)||(13748630-13748723)
chr6 (1-89)||(9698247-9698335)
chr6 (1-95)||(24203895-24203989)
chr6 (1-97)||(7273241-7273337)
chr6 (1-107)||(30014441-30014547)
chr6 (1-97)||(26466897-26466993)
chr6 (31-95)||(33242531-33242595)
chr6 (142-211)||(6228290-6228359)
chr6 (142-206)||(15717048-15717112)
chr6 (144-191)||(29322026-29322073)
chr6 (31-97)||(27441670-27441736)
chr6 (38-96)||(33254049-33254107)
chr6 (142-211)||(20415592-20415661)
chr6 (141-191)||(1128469-1128519)
chr6 (150-192)||(19748103-19748145)
chr6 (28-69)||(22880690-22880732)
chr6 (145-191)||(24794945-24794991)
chr6 (142-211)||(18903397-18903466)
chr6 (31-100)||(31109125-31109194)
chr6 (143-191)||(25045737-25045785)
[»] chr1 (39 HSPs)
chr1 (1-100)||(7447923-7448022)
chr1 (1-100)||(48498865-48498964)
chr1 (1-99)||(750209-750307)
chr1 (1-95)||(5489874-5489968)
chr1 (1-97)||(24769405-24769501)
chr1 (1-96)||(50448167-50448262)
chr1 (1-95)||(23989431-23989525)
chr1 (1-95)||(43570994-43571088)
chr1 (1-96)||(4401426-4401521)
chr1 (2-96)||(2497469-2497563)
chr1 (1-94)||(37814876-37814969)
chr1 (142-223)||(34702331-34702412)
chr1 (31-100)||(35003422-35003491)
chr1 (150-211)||(50065014-50065075)
chr1 (143-223)||(43109256-43109336)
chr1 (1-96)||(4888141-4888235)
chr1 (31-98)||(44112805-44112872)
chr1 (142-211)||(24134654-24134723)
chr1 (31-107)||(38113091-38113167)
chr1 (31-95)||(45705953-45706017)
chr1 (31-96)||(45427652-45427717)
chr1 (38-95)||(45639640-45639697)
chr1 (142-191)||(47651868-47651917)
chr1 (31-92)||(48119756-48119817)
chr1 (142-191)||(49619968-49620017)
chr1 (142-191)||(50011503-50011552)
chr1 (142-194)||(23368779-23368831)
chr1 (142-206)||(27054686-27054750)
chr1 (31-95)||(35000021-35000085)
chr1 (142-186)||(35527390-35527434)
chr1 (142-194)||(39304250-39304302)
chr1 (144-191)||(8893858-8893905)
chr1 (31-98)||(26585590-26585657)
chr1 (95-125)||(25819146-25819176)
chr1 (142-191)||(25585356-25585405)
chr1 (31-96)||(41065279-41065344)
chr1 (158-191)||(42937279-42937312)
chr1 (142-191)||(48497263-48497312)
chr1 (144-188)||(2017737-2017781)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-99)||(783-881)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-98)||(112753-112850)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-95)||(14097-14190)
scaffold0187 (1-95)||(24425-24518)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-95)||(11349-11443)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-89)||(23335-23423)
[»] scaffold0018 (1 HSPs)
scaffold0018 (142-206)||(121834-121898)
[»] scaffold0003 (1 HSPs)
scaffold0003 (31-97)||(45625-45691)
[»] scaffold0001 (1 HSPs)
scaffold0001 (142-211)||(419708-419777)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 30912564 - 30912465
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  30912564 ttctatttgtgtggggtctaggttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatggggtggtacatgtatcatcactcttttt 30912465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42197437 - 42197344
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||||||||||||| || ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  42197437 ttctatttgtgtggggtccagattgccacgtgtcaaaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcact 42197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 29705460 - 29705548
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    ||||||||||| |||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29705460 ttctatttgtgcggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 29705548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 36743485 - 36743390
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||||||| || ||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  36743485 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaatggtgtattgccacatggggtggtacatgtatcatcactct 36743390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2547094 - 2547188
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||| || | |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  2547094 ttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacatgtatcatcactc 2547188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9241650 - 9241744
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  9241650 ttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgcaaagggtgtgttgccacatggggtggtacatgtatcatcactc 9241744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 20148859 - 20148956
Alignment:
Q  2 tctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    ||||||| |||||| || || ||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20148859 tctatttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtggtacatgtatcaccactctttt 20148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2165965 - 2165877
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  2165965 ttctatttgtgtggggttcaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgtcacatgggatggtacatgtatca 2165877  T

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Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11582864 - 11582952
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  11582864 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 11582952  T

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Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 29800952 - 29800862
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 91  Q
    |||||||| ||||||||| || ||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29800952 ttctatttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 29800862  T

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Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 30660744 - 30660648
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||| | |||||||||||||||||||||| || || ||||||||||| |||||||    
T  30660744 ttctatttgtgtggggtccaggttgccacgtgtcagaattttatgtggatgtaaagggtgtattgccacataggatgatacatgtatcatcactctt 30660648  T

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Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 45397414 - 45397508
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||||||||||| || || ||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  45397414 ttctatttgtgtgggctccagattgccacgtgtcagaattttgtgtgggtgtaaagggtgtgttgccacat-gggtggtacatgtatcatcactct 45397508  T

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Target: chr8; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31384762 - 31384856
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| ||||||  ||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||| ||||| |||||    
T  31384762 ttctatttgtgtggggtccaggttgctacgtgtcagaattttatgtggatgtaaagggtatattgccacatggggtggtacatatatcatcactc 31384856  T

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Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 26125733 - 26125825
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||| |||||| || || ||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||    
T  26125733 ttctatttatgtggg-tccagattgccacgtgtcagaattttatgcgggtgtaaagggtgtattgccacatggggtggtacatatatcaccact 26125825  T

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Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3743869 - 3743963
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||| ||||  || ||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  3743869 ttctatttatgtagggttcagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgctacatggggtggtacatatatcatcactc 3743963  T

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Target: chr8; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 1375640 - 1375737
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||| ||  || ||| ||||||| ||||| |||||| |||||||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  1375640 ttctatttgtgtggagttcagattgccacgtgttagaatcttgtgtgggtgtaaagaatgtattgtcacatagggtggtacatgtatcaccactcttt 1375737  T

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Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5755001 - 5755072
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatg 72  Q
    |||||||| |||||| || | |||| ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  5755001 ttctatttatgtgggatccaagttgccacgtgttagaattttgtgtgggtgtaaagggtgtattgccccatg 5755072  T

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Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 34304916 - 34304981
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||| ||||||| | |||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  34304916 tgtcaggattttgtttgggtgtaagaggtgtattgccacatggggt-gtacatgtatcaccactctt 34304981  T

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Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42295293 - 42295386
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| |||||| || | |||| ||| |||||||||||||||| | |||||||||| ||||||||||| || |||||||| ||||| |||||    
T  42295293 ttctatttatgtggg-tccaagttgccacatgtcagaattttgtgtggatgtaaagggtatattgccacataggatggtacatttatcatcactc 42295386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 29114098 - 29114147
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  29114098 cccatgaacttagctcatttgataagggataatgcacaatttgtgcaggg 29114147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 41454926 - 41454857
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  41454926 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 41454857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 10678124 - 10678060
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  | |||||||||||||||||  ||||||||||||||||||    
T  10678124 tgtcaggattttgtgtgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 10678060  T

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Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 13906725 - 13906661
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || ||||||||    
T  13906725 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 13906661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 33629965 - 33629901
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||| |||||||||| |||||||  |||||||||||||||||||  |||||| |||||||||||    
T  33629965 tgtcaaaattttgtgtaggtgtaagaggtgtattgccacatgggggtgtacatatatcaccactc 33629901  T

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Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 41845527 - 41845464
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    |||||| ||||| ||||||| ||||| ||||||||||||||||||||||| | || ||||||||    
T  41845527 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggatcggggttcgaacc 41845464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40528636 - 40528542
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||  | |||||||| ||||| |||||||||| | |||||| | | ||||| |||||| ||  | ||||||||||||||||    
T  40528636 ttctatttgtgtggggttcaagttgtcacatgtcataattttgtgtggatgtaaatgatatattgtcacatgagggtgcacatgtatcaccactc 40528542  T

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Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 1032566 - 1032615
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  1032566 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 1032615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 31153508 - 31153549
Alignment:
Q  170 ataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  31153508 ataatgcacaatatgtgcaggggccgggattcgaacctcgga 31153549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 35181644 - 35181709
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||| ||||||||| |||||||  ||||||||||||||||  |  |||||||||||||||||||    
T  35181644 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcaccactct 35181709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 38063973 - 38064024
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggac 193  Q
    ||||||| |||| |||||||| ||||| |||||||||||| |||||||||||    
T  38063973 cccatgagcttaattcatttggtaagggataatgcacaatttgtgcagggac 38064024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 30466675 - 30466741
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctc 208  Q
    ||||||| ||||| ||||||| |||||  ||||||||||||||||||||| |  || ||||||||||    
T  30466675 cccatgagcttagctcatttggtaagggctaatgcacaatatgtgcaggggctggggttcgaacctc 30466741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 38289326 - 38289268
Alignment:
Q  150 cttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctc 208  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||  | || ||||||||||    
T  38289326 cttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctc 38289268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 10161960 - 10162009
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| |||| || ||||| ||||||||||||||||||||||    
T  10161960 cccatgagcttagctcatctggtaagggataatgcacaatatgtgcaggg 10162009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 12957955 - 12957922
Alignment:
Q  96 tttttattaatatgtgtgaaatgaacaaataact 129  Q
    ||||| ||||||||||||||||||||||||||||    
T  12957955 ttttttttaatatgtgtgaaatgaacaaataact 12957922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 23139070 - 23139119
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| |||||||| |||| |||||||||||| |||||||||    
T  23139070 cccatgagcttagctcatttgacaagggataatgcacaatgtgtgcaggg 23139119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 44828532 - 44828483
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| |||||||||||| |||||||||    
T  44828532 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggg 44828483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 22652680 - 22652728
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||| ||||| ||||||||||||| |||||||| ||| |||||||||    
T  22652680 ccatgagcttagctcatttgataagggataatgcataatttgtgcaggg 22652728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 38545009 - 38544961
Alignment:
Q  156 tcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaa 204  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||| ||||||    
T  38545009 tcatttggtaagggataatgcacaatatgtgcatggatcagggttcgaa 38544961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 39104612 - 39104672
Alignment:
Q  151 ttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    |||| ||||||| ||||| |||||||||||||||||||| | || || |||||||| ||||    
T  39104612 ttagctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccgga 39104672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41334665 - 41334571
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41334665 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 41334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 25914998 - 25914902
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  25914998 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactctt 25914902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7617231 - 7617327
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||| |||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  7617231 ttctatttatgtgggatctaagttgtcacatgtcagaattttgtgttggtgtaaaaggtgtattgccacatggggtgatacatgtatcatcactctt 7617327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5257093 - 5257188
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| ||||||||| || ||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5257093 ttctatttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 5257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18034080 - 18034174
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||| |||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  18034080 ttctatttgtgtggggtccaggttgccacgtgtcagaattttatatgggtgtaaagggtgtattgccatatggggtggtacatgtatcatcactc 18034174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2614651 - 2614550
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||  ||||| |||    
T  2614651 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatcattactctattt 2614552  T
Q  101 at 102  Q
    ||    
T  2614551 at 2614550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39122358 - 39122261
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    ||||||||||||||||| ||||||| ||| ||||||||| |||||| | |||||| | | ||||| ||||||||||||||||||||||||||||||||    
T  39122358 ttctatttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaatgatatattgtcacatggggtggtacatgtatcaccactcttt 39122261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33801567 - 33801662
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||||||||||| || | |||| |||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||| ||||| ||||||    
T  33801567 ttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatgggaaggtacatatatcatcactct 33801662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22512403 - 22512472
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccaca 70  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| | |||||||||||||||||||||    
T  22512403 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccaca 22512472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 38470677 - 38470765
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||| ||||||||| || ||  ||||| |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  38470677 ttctatttatgtggggtccagattaccacgtatcagaattttatgtgggtgtaaagggtgtattgccatatgaggtggtacatgtatca 38470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 30622691 - 30622627
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||| |||||||||| |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  30622691 tgtcaaaattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 30622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 32473366 - 32473303
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||||||||||| |||||||  ||||||||||||||||| |  |||||||||||||||||    
T  32473366 tgtcagaattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcaccact 32473303  T

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Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 31250143 - 31250212
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  31250143 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 31250212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 38503356 - 38503287
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  38503356 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 38503287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 43227865 - 43227931
Alignment:
Q  145 atgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    |||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  43227865 atgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 43227931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 12375511 - 12375447
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| ||| | |||||||||||||||||||||| || || ||||||||    
T  12375511 cccatgagcttagctcatttggtaatggataatgcacaatatgtgcaggggccggggttcgaacc 12375447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 15696212 - 15696264
Alignment:
Q  151 ttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcga 203  Q
    |||| ||||||||||||| ||||||||||||||||| |||| || ||||||||    
T  15696212 ttagctcatttgataagggataatgcacaatatgtgtaggggccgggattcga 15696264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 17077360 - 17077426
Alignment:
Q  145 atgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    |||| ||||| ||||||| ||||| |||||||||||| |||||||||  | ||||||||||| ||||    
T  17077360 atgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgggattcgaaccccgga 17077426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39122435 - 39122381
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaa 55  Q
    ||||||||||||||||| ||||||| ||| ||||||||| |||||| | ||||||    
T  39122435 ttctatttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaa 39122381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 36150228 - 36150325
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36150228 ttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 36150325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40808963 - 40809057
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||    
T  40808963 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactc 40809057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 53581860 - 53581766
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  53581860 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacaggtatcatcactc 53581766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 42394421 - 42394324
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||||| || ||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42394421 ttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 42394324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 46941151 - 46941246
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  46941151 ttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagagtgtattgccacatggggtggtacatgtatcatcactct 46941246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 52629926 - 52630021
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| ||| ||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52629926 ttctatttatgtagggtccaggttgctacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactct 52630021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 24688404 - 24688310
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||    
T  24688404 ttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggggtaaatggtgtattgccacatggggtggtacatgtatcatcactc 24688310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40480847 - 40480941
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  40480847 ttctatttgtgtagggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccgcatggggtgatacatgtatcatcactc 40480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 54237194 - 54237288
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| || ||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  54237194 ttctatttgtgtggggtccagattgccacgtgtcagaatattgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 54237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1078316 - 1078412
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||| ||  |||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  1078316 ttctatttgtgtggagttcaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgaggtggtacatgtatcatcactctt 1078412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 54246150 - 54246054
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| |||||| ||| |||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  54246150 ttctatttgtgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaagaatgtattgccacatggggtggtacatgtatcatcactctt 54246054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25413779 - 25413874
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||||||| |||||  ||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  25413779 ttctatttgtgtggggtccaggttaccacgtgtcagagttttgtgtgggtgtaaagggtgtattgtcatatggggtggtacatgtatcatcactct 25413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 47191028 - 47190931
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||||| | |||  ||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  47191028 ttctatttgtgtggggtccaagttaccacatgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatggtacatgtatcatcactcttt 47190931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 45126930 - 45126836
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| || ||  ||| || ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  45126930 ttctatttatgtggggtccagattaccacatgccagaattttatgtgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactc 45126836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 42100789 - 42100872
Alignment:
Q  4 tatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtat 87  Q
    ||||||||||| ||  |||||| |||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||    
T  42100789 tatttgtgtggagttcaggttgccacgtgtcagaattttatgtgggtgtaaagggtgcattgccacatgaggtggtacatgtat 42100872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27748661 - 27748746
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||| ||||         |||||||||||||||||||||||||||||||||||    
T  27748661 ttctatttgtgtggggtccaggttgccacatgtcagaattttgtgtcggtg---------tattgccacatggggtggtacatgtatcaccactc 27748746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11064724 - 11064627
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    ||||||||||||||||||||| ||  ||| ||||| |||||||||| ||||||| |||||||||| ||||   |   |||||||||||||||||||||    
T  11064724 ttctatttgtgtggggtctagattaccacatgtcaaaattttgtgtgggtgtaaggggtgtattgtcacacaagagtgtacatgtatcaccactcttt 11064627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 19148896 - 19148965
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||| |||||||  |||||||||||||||||||  |||||||| |||||| |||||||    
T  19148896 tgtcagaattttgtgtgggtgtaagtggtgtattgccacatgggggtgtacatgtgtcaccattcttttt 19148965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 25165436 - 25165505
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||| || |||||||| ||||    
T  25165436 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggaccggggttcgaaccccgga 25165505  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 29556956 - 29556864
Alignment:
Q  5 atttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||  |||||| ||| ||||||| |||| | | ||||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  29556956 atttgtgtggggttcaggttgccacatgtcaga-ttttatatgggtgtaaattgtgtattgccacatgtagtggtacatgtatcaccactcttt 29556864  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 9434252 - 9434316
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||| |||||||  ||||||||||||||||||   ||||||||||||||||||    
T  9434252 tgtcagaattttgtgtgggtgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 9434316  T

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Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 39739270 - 39739351
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcggatacctcatttat 223  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||||   || |||||||| |||| |||||| ||||    
T  39739270 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccccggacacctcacttat 39739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 11483609 - 11483672
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaac 205  Q
    ||||||| ||||| ||||||| ||||| |||||||| ||||||||||||| ||||| |||||||    
T  11483609 cccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccagggttcgaac 11483672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 54429235 - 54429173
Alignment:
Q  33 tcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||| |||||||  |||||||||||| ||||||  ||||||||||| ||||||    
T  54429235 tcagaattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatcgccactc 54429173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 2259153 - 2259202
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  2259153 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 2259202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 51757721 - 51757789
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||| ||||| |||||||  ||| |||||||||||||||| |||||||||||||||||| ||||    
T  51757721 tgtcaggattgtgtgtgggtgtaagaggtatattgccacatggggt-gtacatgtatcaccactcatttt 51757789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 30162653 - 30162717
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||| || || || ||||||||    
T  30162653 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaagggccggggttcgaacc 30162717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 34225192 - 34225240
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  34225192 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 34225240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 46798578 - 46798642
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||  ||||||| | ||| |||||||||||||||||||||| || |||||||||||    
T  46798578 cccatgagcttaactcatttggtgagggataatgcacaatatgtgcaggggccgggattcgaacc 46798642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 53273639 - 53273599
Alignment:
Q  57 ggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  53273639 ggtgtattgccacatgggatggtacatgtatcatcactctt 53273599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 4190237 - 4190170
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||| ||||||||| |||||||  |||||||||||||||  ||   ||||||||||||||||||||    
T  4190237 tgtcaggattttgtgtgggtgtaagaggtgtattgccacataagggtatacatgtatcaccactcttt 4190170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 16141452 - 16141409
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgt 185  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||    
T  16141452 cccatgagcatagttcatttgataagggataatgcacaatatgt 16141409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 45510793 - 45510828
Alignment:
Q  156 tcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||||||||||||||||| |||||||||||||||    
T  45510793 tcatttgataaggaataatgtacaatatgtgcaggg 45510828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 33528304 - 33528255
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| |||||||||||| |||||||||    
T  33528304 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggg 33528255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 46247256 - 46247305
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| |||||||||||| |||||||||    
T  46247256 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggg 46247305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 47864640 - 47864681
Alignment:
Q  150 cttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||    
T  47864640 cttagctcatttggtaagggataatgcacaatatgtgcaggg 47864681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 22602293 - 22602253
Alignment:
Q  151 ttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||| ||||||| ||||||||||||||||||||||| ||||    
T  22602293 ttagctcatttggtaaggaataatgcacaatatgtgtaggg 22602253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 29226322 - 29226386
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| ||||| ||||  |||||||||||||||| || || ||||||||    
T  29226322 cccatgagcttagctcatttggtaagggataacacacaatatgtgcaggggccggggttcgaacc 29226386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30838730 - 30838826
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  30838730 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtaggtgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 30838826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42849861 - 42849768
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  42849861 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcact 42849768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19047255 - 19047352
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||||| || ||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19047255 ttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 19047352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4764728 - 4764633
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||| ||||||    
T  4764728 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactct 4764633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 43490403 - 43490304
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||| ||||||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| || ||||||||||    
T  43490403 ttctatttatgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtagcatcactcttttt 43490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1750512 - 1750606
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||  ||||| |||||    
T  1750512 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtgtgagtgtaaagggtgtgttgccacatggggtggtacaaatatcatcactc 1750606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 16096858 - 16096940
Alignment:
Q  13 ggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||||    
T  16096858 ggggtctaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgatgtggtacatgtatcatcactc 16096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43335765 - 43335671
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| |||||| || |||||| |||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||    
T  43335765 ttctatttatgtgggatccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtatattgccacatggggtggtacatgtatcatcactc 43335671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12302255 - 12302167
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||| ||||||||| |||||  || ||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||||||    
T  12302255 ttctatttatgtggggtccaggttaccatgtgtcagaattttgtgtggatgtaaaggatgtattgccacatggggtgatacatgtatca 12302167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42026867 - 42026955
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||||||||||  |  |||||||||||||||| ||||||| |||||||||||||||||| |  ||||||||||||    
T  42026867 ttctatttgtgtggggtctaggttgcaagatgtcagaattttgtgtgggtgtaaggggtgtattgccacatggaggtgtacatgtatca 42026955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 34895713 - 34895645
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  ||||||||||||||||||||||    
T  34895713 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactctttt 34895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 18491840 - 18491902
Alignment:
Q  38 attttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    ||||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||    
T  18491840 attttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcttttt 18491902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34817778 - 34817681
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    ||||||||||  ||| || |||||| ||| |||||||||||||| | ||||||| ||| | ||||||||||||||  |||||||||||| ||||||||    
T  34817778 ttctatttgtacgggatccaggttgccacatgtcagaattttgtatgggtgtaaggggagcattgccacatgggggtgtacatgtatcatcactcttt 34817681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 41281946 - 41281877
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||||||||| |||||||  |||||||||||| ||||||  |||||||||||||||||||||||    
T  41281946 tgtcaggattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatcaccactcttttt 41281877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 6518466 - 6518398
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||| ||||||||| |||||||| ||||||||| ||||||| |  ||||||||||||||||||||||    
T  6518466 tgtcaggattttgtgtgggtgtaaaaggtgtattgacacatggaggtgtacatgtatcaccactctttt 6518398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 11825626 - 11825562
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  11825626 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatggggatgtacatgtatcaccactc 11825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 33482741 - 33482675
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctc 208  Q
    ||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||  | ||||||||||    
T  33482741 cccatgaacttagctcatttggtaaggaatgatgcacaatatatgcagggaccgtggttcgaacctc 33482675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13780737 - 13780676
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgta 62  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||| | |||||||||||||||    
T  13780737 ttctatttatgtggggtccaggttgccacatgtcagaattttgtataggtgtaaagggtgta 13780676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 39149269 - 39149201
Alignment:
Q  27 cacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||| ||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||||    
T  39149269 cacgtctcataattttgtgtgggtgtaaaaggtgtattaccacatggg-tggtacatgtatcatcactct 39149201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 43114685 - 43114754
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||||||||| |||||||  |||||||||||||||| ||  |||||||||||||||||| ||||    
T  43114685 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgagggtgtacatgtatcaccactcatttt 43114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 966806 - 966742
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  |||||||| ||||||||||  ||||||||||||||||||    
T  966806 tgtcaggattttgtgtgggtgtaagaggtgtatttccacatggggatgtacatgtatcaccactc 966742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 12415432 - 12415368
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||| | |||||  ||||||||||||||||||   ||||||||||||||||||    
T  12415432 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 12415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 12427492 - 12427428
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||| | |||||  ||||||||||||||||||   ||||||||||||||||||    
T  12427492 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactc 12427428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 11069442 - 11069395
Alignment:
Q  144 catgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  11069442 catgagcttagctcatttggtaaggaataatgcacaatatgtgcaggg 11069395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 27463624 - 27463561
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    |||||| ||||| ||||||| |||||||||||||||||||| ||||||  || |||||||||||    
T  27463624 ccatgagcttagctcatttggtaaggaataatgcacaatatatgcaggagccgggattcgaacc 27463561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 12531635 - 12531567
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||| ||||||||| |||||||  |||||||||||| |||| |  |||||||||||| |||||||||    
T  12531635 tgtcaggattttgtgtgggtgtaagaggtgtattgccatatggaggtgtacatgtatcatcactctttt 12531567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 16403522 - 16403570
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  16403522 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 16403570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 16804096 - 16804160
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||| |||||||  ||||||||| || || |||  ||||||||||||||||||    
T  16804096 tgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16804160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 16843378 - 16843442
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||| |||||||  ||||||||| || || |||  ||||||||||||||||||    
T  16843378 tgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16843442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 25553244 - 25553197
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcag 189  Q
    ||||||| |||| |||||||| ||||| ||||||||||||||||||||    
T  25553244 cccatgagcttaattcatttggtaagggataatgcacaatatgtgcag 25553197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 34107494 - 34107540
Alignment:
Q  145 atgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  34107494 atgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 34107540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 4299392 - 4299323
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||||||||| |||||||  | ||||||||||||||  |  |||||||||||||||||| ||||    
T  4299392 tgtcaggattttgtgtgggtgtaagagatgtattgccacatgaaggtgtacatgtatcaccactcatttt 4299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 31149200 - 31149151
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| | ||| ||||||| ||||| ||||||||||||||||||||||    
T  31149200 cccatgagcatagctcatttggtaagggataatgcacaatatgtgcaggg 31149151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 43027151 - 43027196
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgc 187  Q
    ||||||| ||||| ||||||||||||| |||||||||||| |||||    
T  43027151 cccatgagcttagctcatttgataagggataatgcacaatttgtgc 43027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 41365853 - 41365885
Alignment:
Q  97 ttttattaatatgtgtgaaatgaacaaataact 129  Q
    |||| ||||||||||||||||||||||||||||    
T  41365853 ttttcttaatatgtgtgaaatgaacaaataact 41365885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 16180359 - 16180262
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  16180359 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactcttt 16180262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41861774 - 41861868
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||| ||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  41861774 ttctatttgtatggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactc 41861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32029819 - 32029731
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32029819 ttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 32029731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5810926 - 5810827
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||||| | |||| ||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5810926 ttctatttgtgtggggtccaagttgccacatgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcttttt 5810827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5015493 - 5015583
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 91  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  5015493 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgagtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 5015583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 44326277 - 44326374
Alignment:
Q  2 tctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    ||||||| |||||| || || ||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44326277 tctatttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtggtacatgtatcaccactctttt 44326374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24001014 - 24000926
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  24001014 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 24000926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42538433 - 42538345
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  42538433 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 42538345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26898404 - 26898310
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||| |||||||| ||||||||||||||| || ||||||||||||||||||||    
T  26898404 ttctatttgtgtggggtccaggttaccacgtgtcagaattttatgtgggtgtaaaaggtgtattgccacataggatggtacatgtatcaccactc 26898310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4638201 - 4638106
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||||||||||||||||||||  ||||||||||||| |||| | | |||||||||||||||| ||| | ||||||||||||||||||||||||    
T  4638201 ttctatttgtgtggggtctaggttaccacgtgtcagaatcttgtatggatgtaaagggtgtattgtcacgtagggtggtacatgtatcaccactct 4638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 43343626 - 43343519
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||||| | |||| |||||||||||| ||||||| | |||||| |||||||||||||||| |||||||||||||||| ||||| |||     
T  43343626 ttctatttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactcatttg 43343527  T
Q  101 attaatat 108  Q
    || |||||    
T  43343526 ataaatat 43343519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 44416936 - 44416841
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||||||| | |||| |||||||||||| ||||||| | |||||| |||||||||||||||| |||||||||||||||| ||||||    
T  44416936 ttctatttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactct 44416841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27393262 - 27393174
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||| ||||||||| |||||| | | |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  27393262 ttctatttatgtggggtccaggttgcctcatgtcagaattttatgtgggtgtaaaggatgtattgccacatggggtggtacatgtatca 27393174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42972950 - 42973038
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||||||||    
T  42972950 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacataggatagtacatgtatca 42973038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43317541 - 43317635
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||| |||||||||||||||   ||  ||||||||||||||||||    
T  43317541 ttctatttgtgtggggtctagattgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccacacaagggtgtacatgtatcaccactc 43317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38160581 - 38160505
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtg 77  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  38160581 ttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaggggtgtattgccacatggggtg 38160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 45326118 - 45326214
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||| ||||||||| ||  |  ||| |||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  45326118 ttctatttatgtggggtccagactaccacctgtcagaattttatgtgggtgtaaatggtgtattgtcacatggggtggtacatgtatcaccactctt 45326214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35069819 - 35069917
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||||| |||| |||| | |||| |||||||||||||||||||| | |||||||| | ||||||||||| || |||||||||||||| |||||||||    
T  35069819 ttctatttatgtgaggtccaagttgccacgtgtcagaattttgtgtagatgtaaaggatatattgccacataggatggtacatgtatcatcactctttt 35069917  T

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Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10573847 - 10573941
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| || ||| ||| | |||||||||| ||| |||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  10573847 ttctatttatgtggggtcaagattgccacatatcagaattttatgtgggtgtaaaggatatattgtcacatgcggtggtacatgtatcaccactc 10573941  T

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Target: chr7; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9216399 - 9216487
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    ||||||||||||||||| || |||| | | |||||||||||||||| | |||||| ||||||||| |||||||||||||| || |||||    
T  9216399 ttctatttgtgtggggtttaagttgccgcatgtcagaattttgtgtggatgtaaaaggtgtattgtcacatggggtggtatatatatca 9216487  T

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Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 47279694 - 47279623
Alignment:
Q  33 tcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttttatta 104  Q
    |||||||||| ||| ||| |||||||||||||| || ||||| |||||||||||||||||||||||| ||||    
T  47279694 tcagaattttatgtgggtataaagggtgtattgtcagatgggatggtacatgtatcaccactcttttcatta 47279623  T

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Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5194233 - 5194139
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||||||||| ||| ||| ||||| |||||||||| ||||||| || ||||||||||||   ||  ||||||||||||| ||||    
T  5194233 ttctatttgtgtggggtctagattgccacatgtcaaaattttgtgtgggtgtaagggttgtattgccacacaagggtgtacatgtatcactactc 5194139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 40237047 - 40237112
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||    
T  40237047 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 40237112  T

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Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 40273817 - 40273886
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  40273817 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 40273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 42338346 - 42338297
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  42338346 cccatgagcttagctcatttggtaaggaataatgcacaatatgtgcaggg 42338297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 31408605 - 31408537
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||| ||||| ||| |||||||  ||||||||| |||||||||  ||||||||||||||||||||||    
T  31408605 tgtcaggattttatgtgggtgtaagaggtgtattgtcacatgggggtgtacatgtatcaccactctttt 31408537  T

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Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 24029981 - 24030062
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcggatacctcatttat 223  Q
    |||||||  |||| ||||||||||||| ||||||||||||||||| |||| || || |||||||| | || ||| |||||||    
T  24029981 cccatgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttat 24030062  T

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Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 34322109 - 34322072
Alignment:
Q  156 tcatttgataaggaataatgcacaatatgtgcagggac 193  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  34322109 tcatttgataagggataatgcacaatatgtgcagggac 34322072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 48433809 - 48433760
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  48433809 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 48433760  T

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Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 12166079 - 12166127
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||||||||| ||||||| ||||| |||||||||||| |||||||||    
T  12166079 ccatgaacttagctcatttggtaagggataatgcacaatttgtgcaggg 12166127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 31513415 - 31513483
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||| ||||||||| | |||||  |||||||||||||||  ||  ||||||||||||||||||||||    
T  31513415 tgtcaggattttgtgtagatgtaagaggtgtattgccacataagggtgtacatgtatcaccactctttt 31513483  T

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Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 42554631 - 42554679
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  42554631 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 42554679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 26456104 - 26456053
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggac 193  Q
    ||||||| ||||| ||||||| ||||| | ||||||||||||||||||||||    
T  26456104 cccatgagcttagctcatttggtaagggacaatgcacaatatgtgcagggac 26456053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 31793466 - 31793513
Alignment:
Q  144 catgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  31793466 catgagcttagctcatttgttaagggataatgcacaatatgtgcaggg 31793513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 43440689 - 43440732
Alignment:
Q  146 tgaacttagttcatttgataaggaataatgcacaatatgtgcag 189  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  43440689 tgaacttagtttatttggtaagggataatgcacaatatgtgcag 43440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 23824690 - 23824644
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgca 188  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||    
T  23824690 cccatgagcttagctcatttggtaagggataatgcacaatatgtgca 23824644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 27535203 - 27535137
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||| | |||||  | ||||||||||||||| |   |||||||||||||||||||    
T  27535203 tgtcagaattttgtgtggatgtaagagatgtattgccacatggaggaatacatgtatcaccactctt 27535137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 33385001 - 33385067
Alignment:
Q  33 tcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||| ||||||| | |||||||  ||||||||| |||||||||   |||||||||||||||||||||    
T  33385001 tcaggattttgtatgggtgtaagaggtgtattgtcacatgggggtttacatgtatcaccactctttt 33385067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 45890833 - 45890791
Alignment:
Q  96 tttttattaatatgtgtgaaatgaacaaataactaagttaatt 138  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||    
T  45890833 tttttcttaatacgtgtgaaatgaacaaataactcagttaatt 45890791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 23602278 - 23602351
Alignment:
Q  150 cttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcggatacctcatttat 223  Q
    ||||| |||||||||||||||||||||| | ||| ||||| |||| |  |||||||| |||| |||||| ||||    
T  23602278 cttagctcatttgataaggaataatgcatattatatgcagtgaccggagttcgaaccccggacacctcacttat 23602351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 27234634 - 27234675
Alignment:
Q  96 tttttattaatatgtgtgaaatgaacaaataactaagttaat 137  Q
    ||||| |||||||||||||||||||||||| ||| |||||||    
T  27234634 tttttcttaatatgtgtgaaatgaacaaatgactcagttaat 27234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 27454007 - 27454056
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| |||||||||||| |||||||||    
T  27454007 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggg 27454056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 38378215 - 38378264
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||||  |||||| ||||| ||||| ||||||||||||||||||||||    
T  38378215 cccatgagtttagtttatttggtaagggataatgcacaatatgtgcaggg 38378264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 38160509 - 38160469
Alignment:
Q  56 gggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||||||||||||| | |||||||||||||| ||||||    
T  38160509 gggtgtattgccacatgagatggtacatgtatcatcactct 38160469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27550407 - 27550504
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||| ||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27550407 ttctatttatgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 27550504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1771268 - 1771170
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||||| ||||||||| | |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1771268 ttctatttatgtggggtccaagttgccacgtctcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctttt 1771170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43514688 - 43514594
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||| |||||    
T  43514688 ttctatttgtgtggggtctaggttgccacgtgtcagaattttttgtggatgtaaagagtgtattgccacatggggtggtacatgtatcatcactc 43514594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 55966348 - 55966251
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||| |||||||||||| ||| ||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55966348 ttctatttatgtggggtctagattgccacctgtcagaattttatgtgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactcttt 55966251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28982824 - 28982728
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  28982824 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 28982728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 23036078 - 23036173
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  23036078 ttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaaggatgtgttgccacatggggtggtacatgtatcatcactct 23036173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 25104277 - 25104404
Alignment:
Q  96 tttttattaatatgtgtgaaatgaacaaataactaagttaattgagcccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggacca 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||| ||||| | | | | ||||||||||||||||||||||||||    
T  25104277 tttttattaatatgtgtgaaatgaataaataactaagttaattgtccccttgagcttagctcattcggtgaaggataatgcacaatatgtgcagggacca 25104376  T
Q  196 ggattcgaacctcggatacctcatttat 223  Q
    |||||||||   | ||||||||||||||    
T  25104377 ggattcgaattccagatacctcatttat 25104404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27893844 - 27893750
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| || ||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27893844 ttctatttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 27893750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 43735840 - 43735937
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    ||||||||||||||| || | ||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  43735840 ttctatttgtgtgggatccaagttgtcacgtgtcagaattttatgtggatgtaaagggtgtattgccacgtggggtggtacatgtatcatcactcttt 43735937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31681000 - 31681095
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| |||||||| ||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  31681000 ttctatttatgtggggtttagattgccacgtgtcagaattttatgtaggtgtaaagggtgtattgccacatgggatgctacatgtatcaccactct 31681095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33703239 - 33703333
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||| ||| || | |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  33703239 ttctatttgtgcgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccatatggggtggtacatgtatcatcactc 33703333  T

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Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35017830 - 35017924
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||| |||||    
T  35017830 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaagatgtattgccacatggggtggtacatgtatcatcactc 35017924  T

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Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27864662 - 27864758
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||| ||||||||  || ||  ||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27864662 ttctatttatgtggggttcagattaccacatgtcagaattttatgtggatgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 27864758  T

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Target: chr4; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 51512264 - 51512173
Alignment:
Q  4 tatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||| |||||| |||||||||||||||||||| ||| | || | ||||||||||| ||||||||||||||||||| |||||    
T  51512264 tatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtattaaagatgtattgccacgtggggtggtacatgtatcatcactc 51512173  T

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Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25051791 - 25051885
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||| | |||||| | ||||||||||| ||||||||||||||||||| |||||    
T  25051791 ttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaatgatgtattgccacgtggggtggtacatgtatcatcactc 25051885  T

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Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 41878504 - 41878593
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||  ||     ||||||||||||||||||||||||    
T  41878504 ttctatttgtgtggggtccagattgtcacgtgtcagaattttgtgttggtgtaaagagtgtatt--ca-----ggtggtacatgtatcaccactctt 41878593  T

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Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23204780 - 23204686
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| |||||| ||| |||||||||||| ||| |||||||||| | |||||||||||||| |||||| ||||||| |||||    
T  23204780 ttctatttatgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaaggatatattgccacatgggatggtacgtgtatcatcactc 23204686  T

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Target: chr4; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 56215899 - 56215805
Alignment:
Q  2 tctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||||||||||||||||||||  |  |||||||||||||||| |||||||  ||||||| ||||||||| |  |||||||||||||||||||    
T  56215899 tctatttgtgtggggtctaggttgctatatgtcagaattttgtgtgggtgtaagaggtgtatggccacatggtggtgtacatgtatcaccactct 56215805  T

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Target: chr4; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 41848069 - 41848158
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcac 90  Q
    |||||||||||||||||  || ||||||| ||||||||||||| || | ||||| ||||||||||||||||||||  |||||||||||||    
T  41848069 ttctatttgtgtggggttcagattgtcacatgtcagaattttgcgtggatgtaaggggtgtattgccacatgggggtgtacatgtatcac 41848158  T

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Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 48463452 - 48463361
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacca 92  Q
    |||||||| ||||||||  || ||  ||| |||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  48463452 ttctatttatgtggggttcagattaccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatagagtggtacatgtatcacca 48463361  T

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Target: chr4; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39631199 - 39631275
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtg 77  Q
    |||||||||||||||||  |   ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||    
T  39631199 ttctatttgtgtggggttcaatatgtcacgtgtcagaattttgtgtgggtgtaaaggatgtattgtcacatggggtg 39631275  T

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Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 43949777 - 43949709
Alignment:
Q  27 cacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| | ||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  43949777 cacgtgtcagaattttgtatgggtataaagggtgtattgccaaatagggtggtacatgtatcatcactc 43949709  T

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Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28988571 - 28988669
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||||| |||||| ||  |||||||||||||| |  | |||| |||||||||| |||||| ||  |||||||||||||||||||||||    
T  28988571 ttctatttgtgtggggtccaggttgccatatgtcagaattttgtatgag-gtaaggggtgtattgtcacatgagggtgtacatgtatcaccactcttttt 28988669  T

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Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 19880082 - 19880147
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||    
T  19880082 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 19880147  T

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Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 51974743 - 51974812
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||  | ||||||||||||||||    
T  51974743 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcgggattcgaacctcgga 51974812  T

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Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12497054 - 12497142
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    ||||||||||||| |||  |  ||| ||||||| |||||||||||| ||||||||  |||||||| ||||||||||||| |||||||||    
T  12497054 ttctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtggtgcatgtatca 12497142  T

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Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21687104 - 21687200
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||| ||| ||  |||||| ||||||||||||||||||||   |||||||  ||||||||||||| || |||||||| ||||| |||||||    
T  21687104 ttctatttgtctggagttcaggttgccacgtgtcagaattttgtgtgaatgtaaagaatgtattgccacataggttggtacatatatcatcactctt 21687200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 55272348 - 55272284
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  55272348 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 55272284  T

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Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 8716489 - 8716442
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcag 189  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  8716489 cccatgaacttagctcatttgataagggataatgcacaatatgtgcag 8716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 45490315 - 45490225
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 91  Q
    ||||||||||  ||| || |||||| ||||||||||||| |||||| |||||||| | | ||||||||||| ||||  |||||||||||||    
T  45490315 ttctatttgtacgggatccaggttgccacgtgtcagaatcttgtgtgggtgtaaatgatatattgccacatagggtactacatgtatcacc 45490225  T

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Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 27316715 - 27316619
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaatttt-gtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| | ||| ||| | |||| |||||||||||||||| |||| | |||||||||||||||| |||||||| || || |||||||| ||||||    
T  27316715 ttctatttatttggagtccaagttgccacgtgtcagaatttttgtgtggatgtaaagggtgtattgtcacatgggatgataaatgtatcatcactct 27316619  T

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Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 35037133 - 35037200
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||| ||||||||| |||||||  ||||||||||||||||| || ||||||||||||||||| ||||    
T  35037133 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatggagt-gtacatgtatcaccactatttt 35037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 45848024 - 45847956
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||| | || |||||||| ||||    
T  45848024 ccatgaacttatctcatttgataagggataatgcataatatgtgcagggatcggggttcgaaccccgga 45847956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 17619124 - 17619058
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||| ||||||||| |||||||  ||||||||||||  |||||  ||||||||||||||||||||    
T  17619124 tgtcaggattttgtgtgggtgtaagaggtgtattgccaggtggggatgtacatgtatcaccactctt 17619058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 16556447 - 16556496
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  16556447 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 16556496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 23448969 - 23449018
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||||||||||    
T  23448969 cccatgaacttagcttatttggtaagggataatgcacaatatgtgcaggg 23449018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 27862930 - 27862881
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||||||||| |||||||||||| |||||||||    
T  27862930 cccatgagcttagctcatttgataagggataatgcacaatttgtgcaggg 27862881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 32728511 - 32728552
Alignment:
Q  57 ggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  32728511 ggtgtattgccacatgggggtgtacatgtatcaccactcttt 32728552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 36993037 - 36993086
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||| ||||    
T  36993037 cccatgagcttagctcatttgataagggataatgcacaatatgtgaaggg 36993086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 40407060 - 40407011
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  40407060 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 40407011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 46827678 - 46827609
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||||||||| |||||||  | |||||| |||||||| |  |||||||||||||||||||||||    
T  46827678 tgtcaggattttgtgtgggtgtaagagatgtatttccacatggaggtgtacatgtatcaccactcttttt 46827609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 50815703 - 50815772
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||||||| | |||||||||||| ||||||||| || || |||||||| ||||    
T  50815703 cccatgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaaccccgga 50815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 712088 - 712148
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 91  Q
    |||||| ||||||||| |||||||  ||||||||||||||||| |  ||||||||||||||    
T  712088 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcacc 712148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 48435551 - 48435487
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  | ||||||| |||||||||  ||||||||||||||||||    
T  48435551 tgtcaggattttgtgtgggtgtaagagatgtattgtcacatgggggtgtacatgtatcaccactc 48435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 41327541 - 41327478
Alignment:
Q  5 atttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgcca 68  Q
    |||||||||||||| |||||| ||| ||| |||||||| |||  |||||| |||||||||||||    
T  41327541 atttgtgtggggtccaggttgccacatgttagaattttttgtgagtgtaaggggtgtattgcca 41327478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 960798 - 960748
Alignment:
Q  48 ggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||  |||||||||||||||||||  |||||||||||||||| ||||    
T  960798 ggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccacccttt 960748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 46412471 - 46412389
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacat 83  Q
    |||||||| |||||||| ||  ||| |||||||||||||||||||| | ||||||  || ||||| || || |||||||||||    
T  46412471 ttctatttatgtggggtttaaattgccacgtgtcagaattttgtgtagatgtaaaaagtatattgtcatatagggtggtacat 46412389  T

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Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 13210260 - 13210199
Alignment:
Q  145 atgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    |||| ||||| ||||||| | ||| |||||||||||||||||||||| || || ||||||||    
T  13210260 atgagcttagctcatttggtcagggataatgcacaatatgtgcaggggccggggttcgaacc 13210199  T

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Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 31261803 - 31261754
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| |||| |||||||||||||| |||||||||||| |||| ||||    
T  31261803 cccatgagcttaattcatttgataagggataatgcacaatgtgtgaaggg 31261754  T

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Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 39387474 - 39387523
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||||||||| ||||||| ||||| |||||||| ||| |||||||||    
T  39387474 cccatgaacttagctcatttggtaagggataatgcataatttgtgcaggg 39387523  T

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Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 46283118 - 46283187
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||  ||||||| ||||| |||||||||||||||||||| | || || |||||||| ||||    
T  46283118 cccatgagcttacctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccgga 46283187  T

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Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 22096477 - 22096441
Alignment:
Q  155 ttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  22096477 ttcatttggtaagggataatgcacaatatgtgcaggg 22096441  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3213498 - 3213594
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||| ||||||||| || ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3213498 ttctatttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 3213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21280027 - 21280123
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  21280027 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtatattgccacatggggtggtacatgtatcatcactctt 21280123  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7367647 - 7367746
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  7367647 ttctatttatgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcattcttttt 7367746  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7292845 - 7292935
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 91  Q
    |||||||||||||||||| |||||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  7292845 ttctatttgtgtggggtccaggttgccacgtgtcagaattttgtttgtgtgtaaagggtgtattgccacatggggtggtacatgtatcacc 7292935  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26670011 - 26669913
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  26670011 ttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtggtacatatatcaccgctctttt 26669913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 21293679 - 21293584
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| ||||||||| || ||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21293679 ttctatttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatgaggtggtacatgtatcaccactct 21293584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30736080 - 30736174
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||    
T  30736080 ttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgggatggtacatgtatcatcactc 30736174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13743223 - 13743130
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  13743223 ttctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtggtacatgtatcaccact 13743130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13748723 - 13748630
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  13748723 ttctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtggtacatgtatcaccact 13748630  T

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Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9698335 - 9698247
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    |||||||||||||||||| || ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  9698335 ttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 9698247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 24203989 - 24203895
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||| |||||    
T  24203989 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgtcacatggagtggtacatgtatcatcactc 24203895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7273337 - 7273241
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||| |||||||    
T  7273337 ttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattaccacatggggtggtacatgcatcatcactctt 7273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30014441 - 30014547
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||| | ||||||| | |||  |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  30014441 ttctatttatatggggtccaagttaccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtgatacatgtatcatcacttttttt 30014540  T
Q  101 attaata 107  Q
     ||||||    
T  30014541 tttaata 30014547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 26466897 - 26466993
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||| ||||||  |||||| ||||| |||| ||||||| | |||||||| ||||||||||||||| |||||||| |||||||| |||||||    
T  26466897 ttctatttgtttggggttcaggttgccacgtatcaggattttgtatgggtgtaaaaggtgtattgccacatagggtggtaaatgtatcatcactctt 26466993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 33242531 - 33242595
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  33242531 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 33242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 6228359 - 6228290
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  6228359 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 6228290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 15717112 - 15717048
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || ||||||||    
T  15717112 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaacc 15717048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 29322073 - 29322026
Alignment:
Q  144 catgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  29322073 catgaacttagatcatttggtaagggataatgcacaatatgtgcaggg 29322026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 27441670 - 27441736
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||| ||||| ||| |||||||  ||||||||||||||||||   ||||||||||||||||||||    
T  27441670 tgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactctt 27441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 33254049 - 33254107
Alignment:
Q  38 attttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||||| ||| |||| ||||||||||||||||| |  |||||||||||||||||||    
T  33254049 attttgtgtgggtataaaaggtgtattgccacatggaggtgtacatgtatcaccactct 33254107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 20415661 - 20415592
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    |||||||  |||| ||||||  ||||| |||||||||||||||||||||| ||||| |||||||| ||||    
T  20415661 cccatgagtttagctcattttgtaagggataatgcacaatatgtgcaggggccagggttcgaaccccgga 20415592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 1128519 - 1128469
Alignment:
Q  141 gcccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||||| ||||  ||||||||||||| |||||||| |||||||||||||    
T  1128519 gcccatgaccttaactcatttgataagggataatgcataatatgtgcaggg 1128469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 19748103 - 19748145
Alignment:
Q  150 cttagttcatttgataaggaataatgcacaatatgtgcaggga 192  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||    
T  19748103 cttagctcatttggtaagggataatgcacaatatgtgcaggga 19748145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 22880690 - 22880732
Alignment:
Q  28 acgtgtcagaattttgtgttggtgt-aaagggtgtattgccac 69  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  22880690 acgtgtcagaattttgtgtgggtgtcaaagggtgtattgccac 22880732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 24794991 - 24794945
Alignment:
Q  145 atgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  24794991 atgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 24794945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 18903466 - 18903397
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| |||||||  |||| ||||| |||||||||||||||| || || |||||||| ||||    
T  18903466 cccatgagcttagctcatttggcaagggataatacacaatatgtgcaggggccggggttcgaaccccgga 18903397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 31109194 - 31109125
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||||||||| |||||||  ||||||||||||||| |||  | |||||| ||| ||||||||||    
T  31109194 tgtcaggattttgtgtgggtgtaagaggtgtattgccacataggggtgcacatgtgtcaacactcttttt 31109125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 25045737 - 25045785
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||| ||||| ||||||| ||||| ||||| ||||||||||||||||    
T  25045737 ccatgagcttagctcatttggtaagggataattcacaatatgtgcaggg 25045785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7447923 - 7448022
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  7447923 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatggtacatgtatcatcactcttttt 7448022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 48498964 - 48498865
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  48498964 ttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcatttt 48498865  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 750307 - 750209
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||||||||||||||| | |||  |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  750307 ttctatttgtgtggggtccatgttaccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgggatggtacatgtatcatcactctttt 750209  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5489874 - 5489968
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  5489874 ttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 5489968  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24769501 - 24769405
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24769501 ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagagtgtattgccacatggggtggtacatgtatcatcactctt 24769405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 50448262 - 50448167
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||| |||||| || | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50448262 ttctatttttgtgggttccatgttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactct 50448167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23989525 - 23989431
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| |||||| ||| ||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||||||    
T  23989525 ttctatttgtgtggggtccaggttgccacatgtcagaatcttgtgtgggtgtaaagggtgtattgccatatagggtggtacatgtatcaccactc 23989431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43571088 - 43570994
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  43571088 ttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatatatcatcactc 43570994  T

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Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4401426 - 4401521
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||||||| |   || |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4401426 ttctatttgtgtggggtccaatatgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacatgtatcatcactct 4401521  T

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Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 2497563 - 2497469
Alignment:
Q  2 tctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    ||||||| |||||| || || |||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  2497563 tctatttatgtgggatccagattgtcacgtgtcagaattttatgtgggtataaagggtgtattgccacatggtgtggtacatgtatcaccactct 2497469  T

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Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 37814876 - 37814969
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccact 94  Q
    |||||||| ||||||||| || ||| |||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||    
T  37814876 ttctatttatgtggggtccagattgccacgtgtcagaattttatatggatgtaaagggtgtattgccacatggggtggtacatgtatcaccact 37814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 34702412 - 34702331
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcggatacctcatttat 223  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| |||| |||||| ||||    
T  34702412 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacacctcacttat 34702331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 35003422 - 35003491
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttttt 100  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||  || ||||||||||||||||||||    
T  35003422 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtgcatgtatcaccactcttttt 35003491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 50065014 - 50065075
Alignment:
Q  150 cttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||    
T  50065014 cttagctcatttgataagggataatgcacaatatgtgcagggaccggggttcgaatctcgga 50065075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 43109336 - 43109256
Alignment:
Q  143 ccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcggatacctcatttat 223  Q
    |||||| ||||| ||||||| ||||| |||||||| ||||||||||||| || || |||||||| |||| |||||||||||    
T  43109336 ccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccggggttcgaaccccggacacctcatttat 43109256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4888141 - 4888235
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||||||||||| ||| |  ||| || || |||||||||||||| | |||||||| | ||||||||||| ||||||||||||||||| ||||||    
T  4888141 ttctatttgtgtggtgtccaaattgccatgtatcagaattttgtgtggatgtaaaggatatattgccacat-gggtggtacatgtatcatcactct 4888235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 44112805 - 44112872
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||| |||||||  ||||||||||||||||  |  |||||||||||||||||||||    
T  44112805 tgtcagaattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcaccactcttt 44112872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 24134723 - 24134654
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||||||||||| || || |||||||| ||||    
T  24134723 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccgga 24134654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 38113167 - 38113091
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttttattaata 107  Q
    |||||| ||||||||| |||||||  ||||||||| ||||||| |  ||||||| |||||||||||||| |||||||    
T  38113167 tgtcaggattttgtgtgggtgtaagaggtgtattgtcacatggaggtgtacatgaatcaccactcttttaattaata 38113091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 45705953 - 45706017
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||||| |||||||  ||||||||||||||||| |  ||||||||||||||||||    
T  45705953 tgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcaccactc 45706017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 45427717 - 45427652
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||| ||||||||| | || ||  |||||||||||||||||||  |||||||||||||||||||    
T  45427717 tgtcaggattttgtgtggatggaagaggtgtattgccacatggggatgtacatgtatcaccactct 45427652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 45639697 - 45639640
Alignment:
Q  38 attttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||| |||||||  |||||||||||||| ||||  ||||||||||||||||||    
T  45639697 attttgtgtgggtgtaagaggtgtattgccacaagggggtgtacatgtatcaccactc 45639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 47651868 - 47651917
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  47651868 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 47651917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 48119756 - 48119817
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcacca 92  Q
    |||||| ||||||||| |||||||  ||||||||||||| |||||  |||||||||||||||    
T  48119756 tgtcaggattttgtgtgggtgtaagaggtgtattgccacgtgggggtgtacatgtatcacca 48119817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 49619968 - 49620017
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  49619968 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 49620017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 50011503 - 50011552
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  50011503 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggg 50011552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 23368831 - 23368779
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggacc 194  Q
    ||||||| ||||| ||||||||||||| |||||||||| | ||||||||||||    
T  23368831 cccatgagcttagctcatttgataagggataatgcacattttgtgcagggacc 23368779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 27054686 - 27054750
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||| ||||||| || || ||||||||    
T  27054686 cccatgagcttagctcatttggtaagggataatgcacaatatctgcaggggccggggttcgaacc 27054750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 35000085 - 35000021
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||| ||||||| | |||||||  | |||||||||||||||||  ||||||||||||||||||    
T  35000085 tgtcaggattttgtatgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 35000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 35527434 - 35527390
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtg 186  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||    
T  35527434 cccatgaacttagctcatttggtaagggataatgcacaatatgtg 35527390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 39304302 - 39304250
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggacc 194  Q
    ||||||| ||||| ||||||| ||||| |||||||| ||||||||||||||||    
T  39304302 cccatgagcttagctcatttggtaagggataatgcataatatgtgcagggacc 39304250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 8893858 - 8893905
Alignment:
Q  144 catgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||| ||||||||||||| ||||| |||||||||||||||| |||||    
T  8893858 catgagcttagttcatttggtaagggataatgcacaatatgtacaggg 8893905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 26585590 - 26585657
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||| ||||||||| | |||||  | ||||||||| |||||||  |||||||||||||||||||||    
T  26585590 tgtcaggattttgtgtggatgtaagagatgtattgccgcatgggggtgtacatgtatcaccactcttt 26585657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 25819176 - 25819146
Alignment:
Q  95 ctttttattaatatgtgtgaaatgaacaaat 125  Q
    |||||||||||||||||||||||||||||||    
T  25819176 ctttttattaatatgtgtgaaatgaacaaat 25819146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 25585405 - 25585356
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||||| ||||||||||||| ||| | || |||||||||||||||||||    
T  25585405 cccatgagcttagttcatttggtaaaggatgatgcacaatatgtgcaggg 25585356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 41065279 - 41065344
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 96  Q
    |||||| ||||||||  | |||||  |||||||||||||||||||  |||||| ||||||||||||    
T  41065279 tgtcaggattttgtgcggatgtaagaggtgtattgccacatgggggtgtacatatatcaccactct 41065344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 42937312 - 42937279
Alignment:
Q  158 atttgataaggaataatgcacaatatgtgcaggg 191  Q
    ||||| ||||||||||||||||||||||||||||    
T  42937312 atttggtaaggaataatgcacaatatgtgcaggg 42937279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 48497312 - 48497263
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcaggg 191  Q
    |||||||  |||| ||||||| ||||| ||||||||||||||||||||||    
T  48497312 cccatgagtttagctcatttggtaagggataatgcacaatatgtgcaggg 48497263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 2017781 - 2017737
Alignment:
Q  144 catgaacttagttcatttgataaggaataatgcacaatatgtgca 188  Q
    ||||| ||||| ||||||| ||||| |||||||||||||||||||    
T  2017781 catgagcttagctcatttggtaagggataatgcacaatatgtgca 2017737  T

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Target: scaffold0119 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 783 - 881
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttt 99  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  783 ttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtggtacatatatcaccgctctttt 881  T

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Target: scaffold0038 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 112753 - 112850
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 98  Q
    |||||||||||||||||| || ||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  112753 ttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 112850  T

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Target: scaffold0187 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14190 - 14097
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||| || |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  14190 ttctatttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 14097  T

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Target: scaffold0187; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 24518 - 24425
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    ||||||||||||||| || |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  24518 ttctatttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcatcactc 24425  T

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Target: scaffold0385 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11349 - 11443
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 95  Q
    |||||||  ||||||||| | ||||  ||||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||||| |||||    
T  11349 ttctattgatgtggggtccaagttgctacgtgtcagaattttgtgtaggtgtaaatagtgtattgccacatgggatggtacatgtatcatcactc 11443  T

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Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 23423 - 23335
Alignment:
Q  1 ttctatttgtgtggggtctaggttgtcacgtgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatca 89  Q
    ||||||||||||| |||  |  ||| ||||||| |||||||||||| ||||||||  |||||||| ||||||||||||| |||||||||    
T  23423 ttctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtggtgcatgtatca 23335  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 121898 - 121834
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacc 206  Q
    ||||||| ||||| ||||||| || || ||||||||||||||||||||||||| || ||||||||    
T  121898 cccatgagcttagctcatttggtaggggataatgcacaatatgtgcagggaccggggttcgaacc 121834  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 45691 - 45625
Alignment:
Q  31 tgtcagaattttgtgttggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 97  Q
    |||||| ||||| ||| |||||||  ||||||||||||||||||   ||||||||||||||||||||    
T  45691 tgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactctt 45625  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 419708 - 419777
Alignment:
Q  142 cccatgaacttagttcatttgataaggaataatgcacaatatgtgcagggaccaggattcgaacctcgga 211  Q
    ||||||| ||||| ||||||| ||||| |||||| ||||||||||||||| || || |||||||| ||||    
T  419708 cccatgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaaccccgga 419777  T

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