View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_32 (Length: 210)
Name: NF5029_low_32
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22888485 - 22888316
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22888485 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
22888386 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22888385 |
ctggatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
22888316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 22839239 - 22839069
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
22839239 |
atcatcaaaggtgttgcttcaggtttggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt |
22839140 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacact |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22839139 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgatcatggtgctgatcctcacact |
22839069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 22804523 - 22804353
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
22804523 |
atcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt |
22804424 |
T |
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| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacact |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22804423 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgatcatggtgctgatcctcacact |
22804353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22875115 - 22874946
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
22875115 |
atcatcaaaggtgttgcttcaggtttggtttatctacatgaagaatgggaaaaagttgtgattcatagagacataaaagctagtaatgtgttgttagatt |
22875016 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22875015 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
22874946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22814214 - 22814045
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
22814214 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttattagatt |
22814115 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
22814114 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgaccatggtgcagatcctcacac |
22814045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22893140 - 22892971
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
22893140 |
atcatcaaaggtgttgcttcaggcgtggtttatcttcatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt |
22893041 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||| |
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| T |
22893040 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgaccatggtgcagatcatcacac |
22892971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22808807 - 22808638
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
22808807 |
atcatcaaaggtgttgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtaattcatcgagacataaaggctagtaatgtgttgttagatt |
22808708 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
22808707 |
ctgaatttaatgctaggttgggagattttggtctttcaaggttgtatgaccatggtgcagatcctcacac |
22808638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22830218 - 22830049
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22830218 |
atcatcaaaggtattgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtgattcatagagacataaaggctagtaatgtgttgttagatt |
22830119 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
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|
| T |
22830118 |
ctgaatttaattcaagattgggagattttggtctttcaaggttgtatgatcacggtgcagatcctcacac |
22830049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 22897456 - 22897287
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||| || |||||||||||| | ||||| ||||||||||||||||||||||| |||||||| |||||| |
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| T |
22897456 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
22897357 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
22897356 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacac |
22897287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 22879779 - 22879667
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
22879779 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaaaaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt |
22879680 |
T |
|
| Q |
117 |
ctgaatttaatgc |
129 |
Q |
| |
|
||||||| ||||| |
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|
| T |
22879679 |
ctgaattcaatgc |
22879667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 22912852 - 22912686
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
||||| |||||||||||||| ||| || ||||| | |||||||||||||| |||||||||||||||||||||| || ||||||||||| || |||||| |
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|
| T |
22912852 |
atcattaaaggtgttgcttctggtttgttttatttacatgaagaatgggaacaagttgttattcatagagacattaaagctagtaatgttttattagatg |
22912753 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctca |
183 |
Q |
| |
|
|||| | |||| |||||| || ||||||||| | ||||| || |||||||||| |||||||||| |
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|
| T |
22912752 |
gtgaaatgaatggtagattaggtgattttggtttatcaagattatatgatcatggaactgatcctca |
22912686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 21151527 - 21151696
Alignment:
| Q |
17 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
21151527 |
atcatcaaaggtgttgcttcaagtgtggtttatctacatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt |
21151626 |
T |
|
| Q |
117 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacac |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
21151627 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgatcatggtgcagatcctcacac |
21151696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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