View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_4 (Length: 507)
Name: NF5029_low_4
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 176 - 489
Target Start/End: Original strand, 10336542 - 10336857
Alignment:
| Q |
176 |
cctatcaaatagtttattggttagaaattcatatttttaaagtgaataagtgtcgcggtttgaactccggcagtatatattgtgcaaaccttcctaagct |
275 |
Q |
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| T |
10336542 |
cctatcaaatagtttattggttagaaattcatatttttatagtgaataagtgtcgcggtttgaactctggcaatatatattatgcaaaccttcctaagct |
10336641 |
T |
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| Q |
276 |
aagctgacggccggttggtgaacattttccaatagttctttgtttagtagc---nnnnnnnctctatctttttaatgggattaaatatcattnnnnnnnn |
372 |
Q |
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| T |
10336642 |
aagctgacggccggttggtgaacattttccaatagttctttgtttagtagcttttttttttctctatctttttaatgggattaaatatcatt-aaaaaaa |
10336740 |
T |
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| Q |
373 |
nttatctattaaataaaatgaattatgattttatatgtgaaatatttttcttgtagggcatgaggaagaagtaattagggacatggtgataagcttcatt |
472 |
Q |
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| T |
10336741 |
attatctattaaataaaatgaattatgattttatatgtgaaatatttttcttgtagggcatgaggaagaagtaattagggacatggtgataagcttcatt |
10336840 |
T |
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| Q |
473 |
atggcagggagggacac |
489 |
Q |
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| T |
10336841 |
atggcagggagggacac |
10336857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 10335960 - 10336110
Alignment:
| Q |
16 |
aggaggcttagagatgcagttaaggaggttaagatacttgtcatggaaatgattttagaaaggaagaagaagatgaatgtaaaaggagaggagcttgttg |
115 |
Q |
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| T |
10335960 |
aggaggcttagagatgcagttaaggaggttaagatacttgtcatggaaatgattttagaaaggaagaagatgatgaatgtaaaaggagaggagcttgttg |
10336059 |
T |
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| Q |
116 |
gtggtcaagatctcttgtcacgtcttatttcttcaggttggtgaacattaa |
166 |
Q |
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| T |
10336060 |
gtggtcaagatctcttgtcacgtcttatttcttcaggttggtgaacattaa |
10336110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 19208853 - 19208900
Alignment:
| Q |
180 |
tcaaatagtttattggttagaaattcatatttttaaagtgaataagtg |
227 |
Q |
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| T |
19208853 |
tcaaatggtttagtggttagaaattcacatttttaaagtgaataagtg |
19208900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 37318519 - 37318561
Alignment:
| Q |
185 |
tagtttattggttagaaattcatatttttaaagtgaataagtg |
227 |
Q |
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| T |
37318519 |
tagtttgttggttaaaaattcatttttttaaagtgaataagtg |
37318561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 2710548 - 2710584
Alignment:
| Q |
188 |
tttattggttagaaattcatatttttaaagtgaataa |
224 |
Q |
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|||| ||||||||||||||| |||||||||||||||| |
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| T |
2710548 |
tttagtggttagaaattcatttttttaaagtgaataa |
2710584 |
T |
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