View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5029_low_5 (Length: 446)
Name: NF5029_low_5
Description: NF5029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5029_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 6916103 - 6916525
Alignment:
| Q |
1 |
acatgcttgttggtcaagctatttcatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916103 |
acatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagt |
6916202 |
T |
|
| Q |
101 |
tgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgt |
200 |
Q |
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| T |
6916203 |
tcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgt |
6916302 |
T |
|
| Q |
201 |
tacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916303 |
tacacagcttccagaccagttatattagaacctgttatgc----tgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaaga |
6916398 |
T |
|
| Q |
301 |
gaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtccctcttaacaatatgtttgggtattctacggctattcg |
400 |
Q |
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|||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6916399 |
gaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggctattcg |
6916498 |
T |
|
| Q |
401 |
ttcgatgacacagggaaagggtgaatt |
427 |
Q |
| |
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| T |
6916499 |
ttcgatgacacagggaaagggtgaatt |
6916525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
82 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
181 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
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| Q |
182 |
ctatgcttttaga |
194 |
Q |
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||||||||||||| |
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| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
196 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
295 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
|
| Q |
296 |
caag |
299 |
Q |
| |
|
|||| |
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|
| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15038389 - 15038314
Alignment:
| Q |
1 |
acatgcttgttggtcaagctatttcatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactc |
76 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
15038389 |
acatgcttgttggtcaagctattccatcaaattttttcgctgcaattgagaaaggttttatagaagctgccaactc |
15038314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
360 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
414 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
299 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
361 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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