View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5030-Insertion-3 (Length: 981)
Name: NF5030-Insertion-3
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030-Insertion-3 |
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| [»] chr5 (5 HSPs) |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 842; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 8 - 981
Target Start/End: Complemental strand, 24048238 - 24047250
Alignment:
| Q |
8 |
agaacaaccattaacattaactttaatcacattatctaaaggagggtgccaagcaaccaatttaggagtagggataggagaaggaccaccaaaaatcttc |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24048238 |
agaacaaccattaacattaactttaatcatattatctaaaggagggtgccaagcaaccaatttaggagtagggataggagaaggaccaccaaaaatcttc |
24048139 |
T |
|
| Q |
108 |
ttggtggaattataaatagagtaaatttgggtaagaataaaccagatggggcgattaatgtgaaagaaagcttcgtcgtttctagacttccaaacaaacc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24048138 |
ttggtggaattataaatagagtaaatttgggtaagaataaaccagatggggcgattaatgtgaaagaaagcttcgtcgtttctagacttccaaacaaacc |
24048039 |
T |
|
| Q |
208 |
aacattcactaaaaaagagtgtattatactcacatgatgttatagcaccatcattttttattgaaggtgtgtctagtatctaacatgtttcagtgtctaa |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24048038 |
aacattcactaaaaaagagtgtgttatactcacatgatgttatagcaccatcattttttattgaaggtgtgtctagtatctaacatgtttcagtgtctaa |
24047939 |
T |
|
| Q |
308 |
tattgacatgacaacgacacatgtagttacattcaaaatgttactggtgttagcgtcatgtttggtgtccatatgtatgtttcataggtagtaactgatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24047938 |
tattgacatgacaacgacacatgtagttacattcaaaatgttactggtgttagcgtcatgtttggtgtccgtatgtatgtttcataggtagtaactgatg |
24047839 |
T |
|
| Q |
408 |
tttacttaattgaatttagtgtaaggatttaatttgtatatacacaatcaatgttatttccagtgaagtgaagatgaccgagtcctgacaccatattttc |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24047838 |
tttacttaattgaatttagtgtaaggatttaatttgtatatacacaatcaatgttatttccagtgaagtgaagatgaccgagtcctgacaccatattttc |
24047739 |
T |
|
| Q |
508 |
atctgcaagtcgttaattgtaactcctcttttaactggcaactttaatatactttaatgtaatcttgtgttataggtattttcaaataatcgtaagtctt |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24047738 |
atctgcaagttgttaattgtaactcctcttttaactggcaactttaatatactttaatgtaatcttgtgttataggtattttcaaataatcgtaagtctt |
24047639 |
T |
|
| Q |
608 |
cttgagaatcttgataagcaataatggtcaaatcttgaaaagcattccgggcattacgcaagatgtatcatag----tatgatcaatctaaagacttcta |
703 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
24047638 |
cttgagaatcttgataagcaataatggtcaaatcttgaaaagcattccgggcattacgcaagatgtatcattgtatatatgatcaatctaatgacttcta |
24047539 |
T |
|
| Q |
704 |
tacattacttcgaatttctatctgatgaccatttcatatatccttacagctttcaatttctaaacatcactttaaattttccaataagagaaaatattaa |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24047538 |
tacattacttcgaatttctatctgatgaccatttcatatatccttacagctttcaatttctaaacatcactttaaattttccaataagagaaaatattaa |
24047439 |
T |
|
| Q |
804 |
agtaattaaagtttcacatctaactttatgtgcatggtaaaaatcca-nnnnnnnaaaagttaagaaacttatattttcctaagttggcactttac-aat |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24047438 |
agtaattaaagtttcacatctaactttatgtgcatggtaaaaatccatttttttttaaagttaagaaacttatattttcctaagttggcactttacaaat |
24047339 |
T |
|
| Q |
902 |
ttattct-acgaaa--taagaatgt--aaaacaaaaa--taatgatagatatttac-atggctcatcactactac-ataataagattta |
981 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
24047338 |
ttattctaacgaaaagaaagaatgtaaaaaacaaaaaataaatgatagatatttacaatggctcatcactactacaataataagattta |
24047250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 357 - 450
Target Start/End: Complemental strand, 27217209 - 27217117
Alignment:
| Q |
357 |
ttagcgtcatgtttggtgtccatatgtatgtttcataggtagtaactgatgtttacttaattgaatttagtgtaaggatttaatttgtatatac |
450 |
Q |
| |
|
||||| |||||| |||||||| |||| || ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
27217209 |
ttagcttcatgtctggtgtccgtatgagtgcttcataggtagtaaccaaggtttacg-aattgaatttagtgtaaggatttaatttgtacatac |
27217117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 24110416 - 24110375
Alignment:
| Q |
268 |
ttgaaggtgtgtctagtatctaacatgtttcagtgtctaata |
309 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
24110416 |
ttgaaggtgtgtctagtatgtaacatgtttcggtgtctaata |
24110375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 450
Target Start/End: Complemental strand, 27219800 - 27219765
Alignment:
| Q |
415 |
aattgaatttagtgtaaggatttaatttgtatatac |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
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| T |
27219800 |
aattgaatttagtgtaaggatttaatttgtacatac |
27219765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 34261785 - 34261836
Alignment:
| Q |
407 |
gtttacttaattgaatttagtgtaagg-atttaatttgtatatacacaatca |
457 |
Q |
| |
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|||||||| ||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
34261785 |
gtttacttgattgaatttagtgtaggggatttaatttgtatatactcaatca |
34261836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 31795380 - 31795572
Alignment:
| Q |
20 |
aacattaactttaatcacattatctaaaggagggtgccaagcaaccaatttaggagtagggataggagaaggaccaccaaaaatcttcttggtggaatta |
119 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31795380 |
aacattaactttaatcacattatttggaggagggtaccaagaaactaatctaggagtagggagaggagaaggaccaccaaaaatcttcttggtggaatta |
31795479 |
T |
|
| Q |
120 |
taaatagagtaaatttgggtaagaataaaccagatggggcgattaatgtgaaagaaagcttcgtcgtttctagacttccaaacaaaccaacat |
212 |
Q |
| |
|
|||| | ||||| ||||| |||||||||||||||||||| ||||||||| | |||||||| | || |||| ||||||||||| |||||||||| |
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|
| T |
31795480 |
taaagatagtaagtttggctaagaataaaccagatggggtgattaatgtaagagaaagctccttcatttcaagacttccaaataaaccaacat |
31795572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 37580617 - 37580550
Alignment:
| Q |
391 |
ataggtagtaactgatgtttacttaattgaatttagtgta-aggatttaatttgtatatacacaatca |
457 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
37580617 |
ataggtagtaactaaggtttactcgattgaatttagtgtaggggatttaatttgtatatactcaatca |
37580550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 17488465 - 17488250
Alignment:
| Q |
20 |
aacattaactttaatcacattatctaaaggagggtgccaagcaaccaatttaggagtagggataggagaaggaccaccaaaaatcttcttggtggaatta |
119 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||| ||||||| |||||| | || || ||||||| |||||||||| ||||||||||||||| |
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|
| T |
17488465 |
aacattatctttaatcacattatctggacgagggtgccaagaaaccaatctaggagaaagggtaagagaagggccaccaaaaaatttcttggtggaatta |
17488366 |
T |
|
| Q |
120 |
taaatagagtaaatttgggtaagaataaaccagatggggcgattaatgtgaaagaaagcttcgtcgtttctagacttccaaacaaaccaacattcactaa |
219 |
Q |
| |
|
||| |||||||||||| ||| ||||||| |||||||| ||||| ||| | |||||| |||||| |||||||||||| ||| ||| |||||| || ||| |
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|
| T |
17488365 |
taa--agagtaaatttgtctaacaataaactagatggggtgattattgttagagaaagtttcgtcatttctagacttctaaataaatcaacatccaataa |
17488268 |
T |
|
| Q |
220 |
aaaagagtgtattatact |
237 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
17488267 |
aaaagagtgtgttatact |
17488250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 24267285 - 24267432
Alignment:
| Q |
20 |
aacattaactttaatcacattatctaaaggagggtgccaagcaaccaatttaggagtagggataggagaaggaccaccaaaaatcttcttggtggaatta |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||| ||||||| || ||||| |||| |||| ||||||| ||||||||||||||| || ||| |
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|
| T |
24267285 |
aacattaactttaatcacattatctcgaggatggtgcaaagaaaccaatctaagagtatagatacgagagggaccactaaaaatcttcttggtagagtta |
24267384 |
T |
|
| Q |
120 |
taaatagagtaaatttgggtaagaataaaccagatggggcgattaatgt |
168 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||| || ||||||||| |
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| T |
24267385 |
taaagtgagtaaattt-gctaagaataaaccagatgaggtgattaatgt |
24267432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 2064 - 2186
Alignment:
| Q |
25 |
taactttaatcacattatctaaaggagggtgccaagcaaccaatttaggagtagggataggagaaggaccaccaaaaatcttcttggtggaattataaat |
124 |
Q |
| |
|
|||||||||||||||||| | | |||| | ||||| | ||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||| || |
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|
| T |
2064 |
taactttaatcacattatttggacgaggcttccaagaacccaatctaggagtatggataggagagggaccatcaaaaatcttcttggtggaattacaagg |
2163 |
T |
|
| Q |
125 |
agagtaaatttgggtaagaataa |
147 |
Q |
| |
|
||||||| ||||| | ||||||| |
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|
| T |
2164 |
agagtaagtttggctgagaataa |
2186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 27296673 - 27296723
Alignment:
| Q |
290 |
acatgtttcagtgtctaatattgacatgacaacgacacatgtagttacatt |
340 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||||| |||||||| |
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| T |
27296673 |
acatgtgtcactgtctaatattgacatgacacggacacatgtggttacatt |
27296723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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