View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5030-Insertion-4 (Length: 695)
Name: NF5030-Insertion-4
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030-Insertion-4 |
 | |
|
| [»] scaffold0543 (1 HSPs) |
| | |
|
| [»] scaffold0492 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 575 - 679
Target Start/End: Original strand, 49971766 - 49971870
Alignment:
| Q |
575 |
aaacttccaacttagactgctgtcaattttaagtgaacactttgtaagatgctataaaagacattccggaacaatatctgggtcctcccaatgtgccctg |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49971766 |
aaacttccaacttagactgctgtcaattttaagtgaacactttgtaagatgcgataaaagacatttcggaacaatatctgggtcctcccaatgtgccctg |
49971865 |
T |
|
| Q |
675 |
cataa |
679 |
Q |
| |
|
||||| |
|
|
| T |
49971866 |
cataa |
49971870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 451 - 552
Target Start/End: Original strand, 49971594 - 49971695
Alignment:
| Q |
451 |
gaacctgtggcagtattcaaataaataaaagttgacacactgttgaattccttgcgcacaaagataattccatgaacatttgttcttttgcatctgtatc |
550 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
49971594 |
gaacctgtggcagtatgcaaataaataaaagttgacacactgccgaattccttgcgcacaaagataattccatgaacatttggtgttttgcatctgtatc |
49971693 |
T |
|
| Q |
551 |
ta |
552 |
Q |
| |
|
|| |
|
|
| T |
49971694 |
ta |
49971695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 532
Target Start/End: Original strand, 1999 - 2066
Alignment:
| Q |
465 |
attcaaataaataaaagttgacacactgttgaattccttgcgcacaaagataattccatgaacatttg |
532 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
1999 |
attcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttg |
2066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 532
Target Start/End: Original strand, 3545 - 3612
Alignment:
| Q |
465 |
attcaaataaataaaagttgacacactgttgaattccttgcgcacaaagataattccatgaacatttg |
532 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
3545 |
attcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttg |
3612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University