View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5030-Insertion-5 (Length: 681)

Name: NF5030-Insertion-5
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5030-Insertion-5
NF5030-Insertion-5
[»] chr8 (12 HSPs)
chr8 (8-681)||(13024431-13025103)
chr8 (221-342)||(18096646-18096767)
chr8 (272-525)||(18082280-18082533)
chr8 (601-664)||(13068037-13068100)
chr8 (280-345)||(12647160-12647225)
chr8 (280-339)||(12711786-12711845)
chr8 (276-345)||(12652270-12652339)
chr8 (288-348)||(12709892-12709952)
chr8 (282-345)||(6117901-6117964)
chr8 (282-339)||(12705780-12705837)
chr8 (11-48)||(12712113-12712150)
chr8 (290-339)||(22945459-22945508)
[»] chr4 (2 HSPs)
chr4 (221-342)||(37875592-37875713)
chr4 (297-345)||(20426643-20426691)
[»] chr2 (2 HSPs)
chr2 (278-345)||(44912518-44912585)
chr2 (291-345)||(44937794-44937848)
[»] chr1 (6 HSPs)
chr1 (428-534)||(35011551-35011655)
chr1 (291-349)||(19219179-19219237)
chr1 (11-61)||(17747872-17747923)
chr1 (291-349)||(19225436-19225494)
chr1 (298-339)||(22535211-22535252)
chr1 (230-350)||(17748092-17748211)
[»] chr3 (1 HSPs)
chr3 (291-348)||(2703738-2703795)
[»] chr7 (1 HSPs)
chr7 (277-349)||(6432600-6432672)
[»] chr5 (1 HSPs)
chr5 (278-354)||(42840501-42840577)


Alignment Details
Target: chr8 (Bit Score: 614; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 8 - 681
Target Start/End: Complemental strand, 13025103 - 13024431
Alignment:
Q  8 atttatagcctcaaaagtaattcttggaggaaactcgatggggttgatatgcctgcttcttgcccacattctctcgtgaacatgaatggattttgccatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13025103 atttatagcctcaaaagtaattcttggaggaaactcgatggggttgatatgcctgcttcttgcccacgttctctcgtgaacatgaatggattttgccatt 13025004  T
Q  108 ggttgtcgattgaaggacctgttatggtgtcgtttgactttagcaaagagacattcgttgcaacaccattaccctctaactcagatataaaatataaacg 207  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13025003 ggttgtcgattgaaggacctgttatggtgttgtttgactttaccaaagagacattcgttgcaacaccattaccctctaactcagatataaaatataaaca 13024904  T
Q  208 gatgaaaatgggattggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggt 307  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13024903 gatgaaaatgggattggtggaattagatggatctctttcttacatcactaattacaaccagacgcctgattttcacatttgggttttgggtgaactcggt 13024804  T
Q  308 gtcaaggaatcgtggactaaattctttgttgtcggacccttaacttgtcctcttatctctggtatctcagtagcaaacaagaatcgtatattctttaaca 407  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  13024803 gtcaaagaatcgtggactaaattctttgttgttggacccttaacttgtcctcttatctctggtatctcagtagcgaacaagaatcgtatattctttaacg 13024704  T
Q  408 aaaatgattttttgctaggctggtttgatttaaatacccaaaggattgagaaaattgaagccaaagaagagtcatcttgtttgaacattgcaatttataa 507  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13024703 aaaatgattttgtgctaggctggtttgatttaaatacccaaaggattgagaaaattgaagccaaagaagagtcatcttgtttgcacattgcaatttataa 13024604  T
Q  508 ggaaaaccttcttcctttcggaggaatagtctaatctctaagtttttcagcttgagattcatgaacattgttatttaatttagtaaagaccctcctttta 607  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13024603 ggaaaaccttctttctttcggaggaatagtctaatctctaagtttttcagcttgagattcatgaacattgttatttaatttagtaaagaccctcctttta 13024504  T
Q  608 atgttggaaagatatttaacttacaaagatatttcctacttatttatgctttcaaataaatatctagttcatca 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13024503 atgttggaaagatatttaacttacaaagatatttcctacttatttatgctttcaaat-aatatctagttcatca 13024431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 221 - 342
Target Start/End: Original strand, 18096646 - 18096767
Alignment:
Q  221 ttggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgt 320  Q
    |||||||| |||||||  |||||||||  ||||  ||||||| ||  ||| ||||||||||| |||||||||||||||||| | |||||||||||||| |    
T  18096646 ttggtggagttaaatgagtctctttctgtcatctataattacgacaggacgcctgattttcatatttgggttttgggtgaagtgggtgtcaaggaatcat 18096745  T
Q  321 ggactaaattctttgttgtcgg 342  Q
    |||| ||  |||||||||||||    
T  18096746 ggaccaagctctttgttgtcgg 18096767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 272 - 525
Target Start/End: Original strand, 18082280 - 18082533
Alignment:
Q  272 cctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacccttaacttgtcctcttatctctggta 371  Q
    ||||||||||| ||||||||||||| |||| | ||||| |||||||| ||||| ||  ||||| |||||||  | |  | |||| |  || ||| |  ||    
T  18082280 cctgattttcatatttgggttttggatgaagtgggtgtaaaggaatcatggaccaagctctttattgtcgggtcttataattgttcgattgtctgtccta 18082379  T
Q  372 tctcagtagcaaacaagaatcgtatattctttaacaaaaatgattttttgctaggctggtttgatttaaatacccaaaggattgagaaaattgaagccaa 471  Q
    |||||||||  |||||||| ||||||||||| |  ||| | |||| |  |||||||||||||||||||| |||||||||  |||||  ||||| ||  ||    
T  18082380 tctcagtagggaacaagaaccgtatattcttcaggaaagaagattctgagctaggctggtttgatttaagtacccaaagagttgaggtaattggagttaa 18082479  T
Q  472 agaagagtcatcttgtttgaacattgcaatttataaggaaaaccttcttccttt 525  Q
     | |||||||| ||||| | |||| | ||| ||||||||||| | |||||||||    
T  18082480 cggagagtcattttgttcgcacatggtaatctataaggaaaatcctcttccttt 18082533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 601 - 664
Target Start/End: Original strand, 13068037 - 13068100
Alignment:
Q  601 ccttttaatgttggaaagatatttaacttacaaagatatttcctacttatttatgctttcaaat 664  Q
    ||||||||||||| ||||||||| |||||||||| ||||  |||||||||||||||||||||||    
T  13068037 ccttttaatgttgcaaagatattgaacttacaaaaatataccctacttatttatgctttcaaat 13068100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 12647160 - 12647225
Alignment:
Q  280 tcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 345  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||||| | |||||||| |||||    
T  12647160 tcacatatgggttttgggtgaacatggtgttaaggaatcgtggactaaactttttgttgttggacc 12647225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 12711845 - 12711786
Alignment:
Q  280 tcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 339  Q
    |||||| ||| ||||||||||||||||||| || |||||||||| |||| ||||||||||    
T  12711845 tcacatatggattttgggtgaactcggtgttaaagaatcgtggattaaactctttgttgt 12711786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 12652270 - 12652339
Alignment:
Q  276 attttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 345  Q
    |||||||||| | | ||||||||||| | |||||  ||||||||||||||||| |||||||||| |||||    
T  12652270 attttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacc 12652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 12709952 - 12709892
Alignment:
Q  288 gggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctt 348  Q
    ||||||||||| || |  |||||||||||||||||||||||||||| ||| | ||||||||    
T  12709952 gggttttgggttaaattagtgtcaaggaatcgtggactaaattcttcgttcttggaccctt 12709892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 6117901 - 6117964
Alignment:
Q  282 acatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 345  Q
    |||| ||| ||||||||||||| ||||| || |||||||||| |||| |||||||||| |||||    
T  6117901 acatatggattttgggtgaacttggtgttaaagaatcgtggattaaactctttgttgttggacc 6117964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 12705780 - 12705837
Alignment:
Q  282 acatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 339  Q
    |||| ||| ||||||||||| ||||||| || |||||||||| |||| ||||||||||    
T  12705780 acatatggattttgggtgaagtcggtgttaaagaatcgtggattaaactctttgttgt 12705837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 12712150 - 12712113
Alignment:
Q  11 tatagcctcaaaagtaattcttggaggaaactcgatgg 48  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  12712150 tatagcctcaaaagtaactcttggaggaaaatcgatgg 12712113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 22945459 - 22945508
Alignment:
Q  290 gttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 339  Q
    ||||| |||||||||||| | | |||||||||||||||||| ||||||||    
T  22945459 gttttaggtgaactcggtttgatggaatcgtggactaaattgtttgttgt 22945508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 342
Target Start/End: Original strand, 37875592 - 37875713
Alignment:
Q  221 ttggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgt 320  Q
    |||||||| |||||||  |||||||||  ||||  ||||||| ||  ||| ||||||||||| || ||||||||||||||| | ||| | |||||||| |    
T  37875592 ttggtggagttaaatgagtctctttctgtcatctataattacgacatgacgcctgattttcatatctgggttttgggtgaagtgggtattaaggaatcat 37875691  T
Q  321 ggactaaattctttgttgtcgg 342  Q
    |||| ||  |||||||||||||    
T  37875692 ggaccaatctctttgttgtcgg 37875713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 20426643 - 20426691
Alignment:
Q  297 gtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 345  Q
    |||||||||| || |||||||||||||| ||| |||||||||| |||||    
T  20426643 gtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 20426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 44912585 - 44912518
Alignment:
Q  278 tttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 345  Q
    |||||||| | | ||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacc 44912518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 44937848 - 44937794
Alignment:
Q  291 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 345  Q
    |||||||||||||||| || || ||||| ||||||||| |||||||||| |||||    
T  44937848 ttttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggacc 44937794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 534
Target Start/End: Complemental strand, 35011655 - 35011551
Alignment:
Q  428 tggtttgatttaaatacccaaaggattgagaaaattgaagccaaagaagagtcatcttgtttgaacattgcaatttataaggaaaaccttcttcctttcg 527  Q
    ||||||| ||||| | ||| |||||||||| |||||| || |||| |||  |||| |||||   |||||| ||||||||||||||| |||||| ||||||    
T  35011655 tggtttgttttaagtgccccaaggattgaggaaattggagtcaaataag--tcattttgttcacacattgtaatttataaggaaaatcttctttctttcg 35011558  T
Q  528 gaggaat 534  Q
    |||||||    
T  35011557 gaggaat 35011551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 19219237 - 19219179
Alignment:
Q  291 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 349  Q
    |||||||||||||||||||||||||||| ||||||||  |||| | ||| |||||||||    
T  19219237 ttttgggtgaactcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 19219179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 17747872 - 17747923
Alignment:
Q  11 tatagcctcaaaagtaattcttggaggaaac-tcgatggggttgatatgcct 61  Q
    |||||||||| |||||| ||||||||||||| || |||||||||||||||||    
T  17747872 tatagcctcataagtaactcttggaggaaacttcaatggggttgatatgcct 17747923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 19225494 - 19225436
Alignment:
Q  291 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 349  Q
    |||||||||| ||||||||||||||||| ||||||||  |||| | ||| |||||||||    
T  19225494 ttttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 19225436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 22535252 - 22535211
Alignment:
Q  298 tgaactcggtgtcaaggaatcgtggactaaattctttgttgt 339  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||    
T  22535252 tgaactcggtgtcgaggaatcgtgggctaaactctttgttgt 22535211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 230 - 350
Target Start/End: Original strand, 17748092 - 17748211
Alignment:
Q  230 ttaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaat 329  Q
    |||||||| ||| |||||  |||| |||||||  || ||||| || |||||||||| | | ||| |||| ||||| ||||||||||||| |||||||||     
T  17748092 ttaaatgggtctgtttctctcatctctaattattacaagacaacttattttcacatatagattt-gggtcaactctgtgtcaaggaatcatggactaaag 17748190  T
Q  330 tctttgttgtcggacccttaa 350  Q
    | || ||||| ||||| ||||    
T  17748191 ttttcgttgttggaccattaa 17748211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 2703738 - 2703795
Alignment:
Q  291 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctt 348  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||| ||| | ||||||    
T  2703738 ttttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaaccctt 2703795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 6432600 - 6432672
Alignment:
Q  277 ttttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 349  Q
    ||||||||| |  |||||| ||||||| |||||||| ||||| ||||| ||| ||||  ||||||||||||||    
T  6432600 ttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggaccctta 6432672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 42840577 - 42840501
Alignment:
Q  278 tttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacccttaacttg 354  Q
    ||||||||||   ||||||||||||| ||||| || ||||| ||||||||| ||||| |||| || |||||| ||||    
T  42840577 tttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttg 42840501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University