View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5030-Insertion-6 (Length: 405)

Name: NF5030-Insertion-6
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5030-Insertion-6
NF5030-Insertion-6
[»] chr7 (12 HSPs)
chr7 (246-405)||(14777316-14777475)
chr7 (246-405)||(15229454-15229613)
chr7 (289-326)||(9736880-9736917)
chr7 (289-326)||(14634994-14635031)
chr7 (289-326)||(14644694-14644731)
chr7 (289-326)||(28344140-28344177)
chr7 (295-405)||(4306681-4306801)
chr7 (289-326)||(15947589-15947626)
chr7 (289-326)||(32817931-32817968)
chr7 (289-326)||(33292393-33292430)
chr7 (288-328)||(11634543-11634583)
chr7 (277-328)||(48711495-48711547)
[»] chr5 (18 HSPs)
chr5 (246-405)||(1693791-1693955)
chr5 (246-405)||(17553917-17554076)
chr5 (246-405)||(5600480-5600640)
chr5 (246-405)||(5610126-5610286)
chr5 (246-405)||(31150760-31150920)
chr5 (8-121)||(26296112-26296225)
chr5 (289-382)||(42732724-42732826)
chr5 (289-326)||(11223310-11223347)
chr5 (289-326)||(20035933-20035970)
chr5 (289-357)||(26652557-26652634)
chr5 (289-357)||(26924142-26924219)
chr5 (289-326)||(33955716-33955753)
chr5 (289-326)||(20834365-20834402)
chr5 (289-326)||(22448479-22448516)
chr5 (289-326)||(22457797-22457834)
chr5 (345-405)||(11223379-11223438)
chr5 (288-328)||(24244256-24244296)
chr5 (288-328)||(24290880-24290920)
[»] chr3 (13 HSPs)
chr3 (246-405)||(17529986-17530146)
chr3 (246-405)||(48978570-48978730)
chr3 (246-405)||(48988110-48988270)
chr3 (51-208)||(10979294-10979454)
chr3 (246-350)||(17534980-17535085)
chr3 (277-400)||(54624587-54624710)
chr3 (277-405)||(32877802-32877930)
chr3 (345-405)||(7784133-7784193)
chr3 (289-326)||(5385624-5385661)
chr3 (289-326)||(23486975-23487012)
chr3 (289-326)||(46305789-46305826)
chr3 (288-325)||(19388703-19388740)
chr3 (14-50)||(10979809-10979845)
[»] chr2 (8 HSPs)
chr2 (246-405)||(1790899-1791059)
chr2 (246-405)||(1800393-1800553)
chr2 (246-405)||(22632302-22632462)
chr2 (289-326)||(3396857-3396894)
chr2 (289-326)||(35877450-35877487)
chr2 (289-326)||(35884939-35884976)
chr2 (289-326)||(36724652-36724689)
chr2 (277-328)||(14273125-14273177)
[»] chr4 (5 HSPs)
chr4 (277-405)||(23622851-23622979)
chr4 (289-405)||(16489965-16490084)
chr4 (289-326)||(11482249-11482286)
chr4 (289-326)||(20884665-20884702)
chr4 (289-326)||(50516713-50516750)
[»] chr6 (5 HSPs)
chr6 (277-405)||(12414996-12415124)
chr6 (289-326)||(22066227-22066264)
chr6 (289-326)||(23884426-23884463)
chr6 (345-399)||(14102309-14102363)
chr6 (289-326)||(17512438-17512475)
[»] scaffold0247 (1 HSPs)
scaffold0247 (277-405)||(24525-24653)
[»] scaffold0021 (3 HSPs)
scaffold0021 (277-405)||(99915-100043)
scaffold0021 (277-350)||(180838-180911)
scaffold0021 (289-326)||(143103-143140)
[»] chr8 (14 HSPs)
chr8 (8-130)||(11532847-11532969)
chr8 (289-382)||(31575558-31575660)
chr8 (286-328)||(18143642-18143684)
chr8 (289-326)||(12925288-12925325)
chr8 (289-326)||(20030113-20030150)
chr8 (289-326)||(20044752-20044789)
chr8 (289-326)||(42712394-42712431)
chr8 (289-326)||(12767565-12767602)
chr8 (288-328)||(4843937-4843977)
chr8 (288-328)||(18232861-18232901)
chr8 (288-328)||(18242312-18242352)
chr8 (288-328)||(18251763-18251803)
chr8 (288-328)||(18883373-18883413)
chr8 (345-405)||(20714072-20714131)
[»] chr1 (7 HSPs)
chr1 (331-405)||(26906371-26906445)
chr1 (289-326)||(14272234-14272271)
chr1 (289-326)||(14282100-14282137)
chr1 (289-326)||(3471153-3471190)
chr1 (293-326)||(21919580-21919613)
chr1 (345-405)||(5378550-5378610)
chr1 (277-328)||(21633503-21633555)
[»] scaffold0206 (1 HSPs)
scaffold0206 (289-326)||(2043-2080)
[»] scaffold0053 (1 HSPs)
scaffold0053 (289-326)||(2410-2447)
[»] scaffold0269 (1 HSPs)
scaffold0269 (342-405)||(14939-15002)
[»] scaffold0040 (1 HSPs)
scaffold0040 (293-328)||(9982-10017)
[»] scaffold0010 (1 HSPs)
scaffold0010 (288-328)||(256892-256932)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 14777316 - 14777475
Alignment:
Q  246 ataggatccacaacatagcacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatca 345  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14777316 ataggatccacaacataactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatca 14777415  T
Q  346 agaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  14777416 agaattgtagaaacctgctaaggttaacaatacatggtgtaatagactgatctggcgtga 14777475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 15229454 - 15229613
Alignment:
Q  246 ataggatccacaacatagcacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatca 345  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15229454 ataggatccacaacataactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatca 15229553  T
Q  346 agaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    ||||||||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||    
T  15229554 agaattgtagaaatctgtttaggttaacaatacatggtgtaatagactgatctggcgtga 15229613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 9736880 - 9736917
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  9736880 tagatctcaagtctattgggcttaatagtttgagatag 9736917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 14635031 - 14634994
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14635031 tagatctcaagtctattgggcttaatagtttgagatag 14634994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 14644731 - 14644694
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14644731 tagatctcaagtctattgggcttaatagtttgagatag 14644694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 28344140 - 28344177
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  28344140 tagatctcaagtctattgggcttaatagtttgagatag 28344177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 4306801 - 4306681
Alignment:
Q  295 tcaagtctattaggcttaatagtttgagataga---------acttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaatacagggtgt 385  Q
    ||||||||||| ||||||||||||||| |||||         || |||||||||||||||| ||||||||||  ||||||||||| | ||||||| ||||    
T  4306801 tcaagtctattgggcttaatagtttgatatagagttgttccaacctttcttgtgtgatcaataattgtagaagtctgctgaggttgataatacagagtgt 4306702  T
Q  386 cat-agactgatctggcgtga 405  Q
     ||  ||||||||||| ||||    
T  4306701 aatcggactgatctggtgtga 4306681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 15947626 - 15947589
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  15947626 tagatctcaaggctattgggcttaatagtttgagatag 15947589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 32817931 - 32817968
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  32817931 tagatctcaagtctattgggcttaatagtttaagatag 32817968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 33292430 - 33292393
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  33292430 tagatctcaagtctattgggctcaatagtttgagatag 33292393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 11634583 - 11634543
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  11634583 ttagttctcaagtctattgggctgaatagtttgagatagaa 11634543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 48711547 - 48711495
Alignment:
Q  277 acaaagtgtatt-tagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||||||||| | ||| |||||||||||||  |||||||||||||||||||||    
T  48711547 acaaagtgtaatctaggtctcaagtctattgtgcttaatagtttgagatagaa 48711495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 1693955 - 1693791
Alignment:
Q  246 ataggatccacaacatagcacccttacaaacacaaagtgtatttagatctcaagtctat-----taggcttaatagtttgagatagaacttttcttgtgt 340  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||     | ||||||||||||||||||||||||||||||||||    
T  1693955 ataggatccacaacataactctcttacaaacacaaagtgtatttagatctcaagtctattgggctgggcttaatagtttgagatagaacttttcttgtgt 1693856  T
Q  341 gatcaagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||||||    
T  1693855 gatcaagaattgtagaaatctgatgaggttaacaatacatggtgtaatagactgatctggcgtga 1693791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 17554076 - 17553917
Alignment:
Q  246 ataggatccacaacatagcacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatca 345  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  || ||||||||||| |||    
T  17554076 ataggatccacaacataactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatatgacctttcttgtgtgctca 17553977  T
Q  346 agaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  17553976 agaattgtagaaacctactaaggttaacaatacagggtgtaatagactgatatggcgtga 17553917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 5600480 - 5600640
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5600480 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 5600579  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  5600580 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 5600640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 5610126 - 5610286
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5610126 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 5610225  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  5610226 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 5610286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 31150920 - 31150760
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31150920 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 31150821  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  31150820 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 31150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 26296112 - 26296225
Alignment:
Q  8 agaaggccacaaactaatattctccaccgtaataatttgacatgatttattttgagtgcattcgaaacttgctgcaacttctctttttccacttcctcta 107  Q
    |||||||| ||||  |||||||||||  |||||| |||| |||| ||| ||||||||||| | |||||||||||||||||||   ||||||||||||||     
T  26296112 agaaggcctcaaatcaatattctccaaagtaatattttggcatggtttgttttgagtgcaattgaaacttgctgcaacttctaaatttccacttcctctg 26296211  T
Q  108 atatatttgtaagc 121  Q
    || |||||||||||    
T  26296212 atgtatttgtaagc 26296225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 42732826 - 42732724
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatagaa---------cttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaataca 379  Q
    ||||||||||||||||| ||||||||||||||||||||||         | ||||||||||||||||||||||||||| |||| ||||||| | ||||||    
T  42732826 tagatctcaagtctattgggcttaatagtttgagatagaagagtttcaacctttcttgtgtgatcaagaattgtagaagcctgttgaggttgataataca 42732727  T
Q  380 ggg 382  Q
    |||    
T  42732726 ggg 42732724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 11223310 - 11223347
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11223310 tagatctcaagtctattgggcttaatagtttgagatag 11223347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 20035933 - 20035970
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20035933 tagatctcaagtctattgggcttaatagtttgagatag 20035970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 26652557 - 26652634
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag---------aacttttcttgtgtgatcaagaattgtagaa 357  Q
    ||||||||||||||| | ||||||||||||||||||||         ||| |||||||||||||||||||||||||||    
T  26652557 tagatctcaagtctactgggcttaatagtttgagatagaagagttacaacctttcttgtgtgatcaagaattgtagaa 26652634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 26924142 - 26924219
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag---------aacttttcttgtgtgatcaagaattgtagaa 357  Q
    ||||||||||||||| | ||||||||||||||||||||         ||| |||||||||||||||||||||||||||    
T  26924142 tagatctcaagtctactgggcttaatagtttgagatagaagagttacaacctttcttgtgtgatcaagaattgtagaa 26924219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 33955753 - 33955716
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33955753 tagatctcaagtctattgggcttaatagtttgagatag 33955716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 20834365 - 20834402
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  20834365 tagatctcaagtctattgggcttaatagtttgacatag 20834402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 22448516 - 22448479
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  22448516 tagatctaaagtctattgggcttaatagtttgagatag 22448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 22457834 - 22457797
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  22457834 tagatcttaagtctattgggcttaatagtttgagatag 22457797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 11223379 - 11223438
Alignment:
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    ||||||||||||| |||||||||||| | ||||||||| || | |||||||||||| ||||    
T  11223379 aagaattgtagaagcctgctgaggttgataatacaggg-gttacagactgatctggtgtga 11223438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 24244296 - 24244256
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  24244296 ttagttctcaagtctattgggctgaatagtttgagatagaa 24244256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 24290920 - 24290880
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  24290920 ttagttctcaagtctattgggctgaatagtttgagatagaa 24290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 17530146 - 17529986
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17530146 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 17530047  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  17530046 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 17529986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 48978570 - 48978730
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48978570 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 48978669  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  48978670 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 48978730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 48988110 - 48988270
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48988110 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 48988209  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  48988210 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 48988270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 10979294 - 10979454
Alignment:
Q  51 gatttattttgagtgcattcgaaacttgctgcaacttc---tctttttccacttcctctaatatatttgtaagctacgttgctaggttgtacacttnnnn 147  Q
    |||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||        
T  10979294 gatttattttgagtgcatccgaaacttgctgcaacttcttctctttttccacttcctctaatatatttgtaagccacgttgctaagttgtacacttaaaa 10979393  T
Q  148 nnnccctacacgataaggggcaaagattaactacattatagtgcattaaatgtttactatt 208  Q
       ||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||    
T  10979394 aacccctacacgattagtggcaaatattaactacattatagtgctttagatgtttactatt 10979454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 350
Target Start/End: Complemental strand, 17535085 - 17534980
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17535085 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 17534986  T
Q  345 aagaat 350  Q
    ||||||    
T  17534985 aagaat 17534980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 277 - 400
Target Start/End: Original strand, 54624587 - 54624710
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaat 376  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| | |||    
T  54624587 acaaagtgtaactagatctcaagtctattgggcttaatagtttgagatagatcttttcttgtgtgatcaagaatcgtagaagcctgctgaggttgataat 54624686  T
Q  377 acagggtgtcatagactgatctgg 400  Q
    |||| |||| | ||||||||||||    
T  54624687 acagagtgtaacagactgatctgg 54624710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 32877802 - 32877930
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaat 376  Q
    ||||||||||  |||||||||||||||||  || ||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||| | |||    
T  32877802 acaaagtgtaactagatctcaagtctattgagcataatagtttgagacataacttttcttgtgtgatcaagaatcgtagaagcctgctgaggttgataat 32877901  T
Q  377 acagggtgtcatagactgatctggcgtga 405  Q
    |||| |||| | |||||||||||| ||||    
T  32877902 acagagtgtaacagactgatctggtgtga 32877930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 7784193 - 7784133
Alignment:
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    ||||||||||||| |||||||||||| | |||||||||||| | |||||||||||| ||||    
T  7784193 aagaattgtagaagcctgctgaggttgataatacagggtgtaacagactgatctggtgtga 7784133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 5385624 - 5385661
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5385624 tagatctcaagtctattgggcttaatagtttgagatag 5385661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 23486975 - 23487012
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23486975 tagatctcaagtctattgggcttaatagtttgagatag 23487012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 46305826 - 46305789
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  46305826 tagatctcaagtctattgggcttaatagtttgagatag 46305789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 19388703 - 19388740
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagata 325  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  19388703 ttagatctcaagtctattaggattagtagtttgagata 19388740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10979809 - 10979845
Alignment:
Q  14 ccacaaactaatattctccaccgtaataatttgacat 50  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  10979809 ccacaaattaatattctccaccgtaatattttgacat 10979845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 1790899 - 1791059
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1790899 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 1790998  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  1790999 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 1791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 1800393 - 1800553
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1800393 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 1800492  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  1800493 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 1800553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 22632302 - 22632462
Alignment:
Q  246 ataggatccacaacatag-cacccttacaaacacaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatc 344  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22632302 ataggatccacaacataaactctcttacaaacacaaagtgtatttagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatc 22632401  T
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||| |||||| |||||||||||| | ||||||| |||| |  ||||||||||| ||||    
T  22632402 aagaatcgtagaagcctgctgaggttgataatacagagtgtaacggactgatctggtgtga 22632462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 3396857 - 3396894
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  3396857 tagatctcaagtctattgggcttaatagtttgagatag 3396894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 35877450 - 35877487
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  35877450 tagatctcaagtctattgggcttaatagtttgagatag 35877487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 35884939 - 35884976
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  35884939 tagatctcaagtctattgggcttaatagtttgagatag 35884976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 36724652 - 36724689
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  36724652 tagatctcaagtctattgggcttaatagtttgagatag 36724689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 14273125 - 14273177
Alignment:
Q  277 acaaagtgtatt-tagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||||||||||| ||  ||||||||||||| ||||||||||||| ||||||||    
T  14273125 acaaagtgtattgtatttctcaagtctattgggcttaatagtttaagatagaa 14273177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 23622851 - 23622979
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaat 376  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||    
T  23622851 acaaagtgtaactagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatcaagaatcgtagaagcctgctgaggttgataat 23622950  T
Q  377 acagggtgtcatagactgatctggcgtga 405  Q
    |||| |||| | |||||||||||| ||||    
T  23622951 acagagtgtaacagactgatctggtgtga 23622979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 16490084 - 16489965
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatagaa---cttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaatacagggtgt 385  Q
    |||||||||||| |||| ||||||||||||||||||||||    |||| |||||||||||||||| ||||||  ||||||||||| | ||||| | ||||    
T  16490084 tagatctcaagtttattgggcttaatagtttgagatagaatttttttttttgtgtgatcaagaatcgtagaagtctgctgaggttgataatactgagtgt 16489985  T
Q  386 catagactgatctggcgtga 405  Q
     | |||||||| ||| ||||    
T  16489984 aacagactgatatggtgtga 16489965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 11482249 - 11482286
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11482249 tagatctcaagtctattcggcttaatagtttgagatag 11482286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 20884702 - 20884665
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20884702 tagatctcaagtctattgggcttaatagtttgagatag 20884665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 50516750 - 50516713
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  50516750 tagatctcaagtctattgggcttaatagtttgagatag 50516713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 12414996 - 12415124
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaat 376  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||| |||    
T  12414996 acaaagtgtaactagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatcaagaatcgtagaagcctgctatggttaataat 12415095  T
Q  377 acagggtgtcatagactgatctggcgtga 405  Q
    |||| |||| |  ||||||||||| ||||    
T  12415096 acagagtgtaacggactgatctggtgtga 12415124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 22066227 - 22066264
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  22066227 tagatctcaagtctattgggcttaatagtttgagatag 22066264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 23884426 - 23884463
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23884426 tagatctcaagtctattgggcttaatagtttgagatag 23884463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 14102309 - 14102363
Alignment:
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctg 399  Q
    |||||||||||||  ||||||||||||| |||||||||||| | || ||||||||    
T  14102309 aagaattgtagaagtctgctgaggttaataatacagggtgtaacaggctgatctg 14102363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 17512475 - 17512438
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  17512475 tagatctcaagtctattgggcttaatagttttagatag 17512438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 24525 - 24653
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaat 376  Q
    ||||||||||  ||||||||||||||||| || |||||||||||| |||||||||||| ||||||||||||||| |||||| |||||||||||| | |||    
T  24525 acaaagtgtaactagatctcaagtctattgggtttaatagtttgatatagaacttttcctgtgtgatcaagaatcgtagaagcctgctgaggttgataat 24624  T
Q  377 acagggtgtcatagactgatctggcgtga 405  Q
    |||| |||| |  ||||||||||| ||||    
T  24625 acagagtgtaacggactgatctggtgtga 24653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 99915 - 100043
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaat 376  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| | || ||||||| | |||    
T  99915 acaaagtgtaactagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatcaagaatcatagaagcttgttgaggttgataat 100014  T
Q  377 acagggtgtcatagactgatctggcgtga 405  Q
    |||| |||| | |||||||| ||| ||||    
T  100015 acagagtgtaacagactgatttggtgtga 100043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 180838 - 180911
Alignment:
Q  277 acaaagtgtatttagatctcaagtctattaggcttaatagtttgagatagaacttttcttgtgtgatcaagaat 350  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  180838 acaaagtgtaactagatctcaagtctattgggcttaatagtttgagatagaacttttcttgtgtgatcaagaat 180911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 143103 - 143140
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  143103 tagatctcaagtctattgggcttaatagtttgagatag 143140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 11532969 - 11532847
Alignment:
Q  8 agaaggccacaaactaatattctccaccgtaataatttgacatgatttattttgagtgcattcgaaacttgctgcaacttctctttttccacttcctcta 107  Q
    ||||||||||||| ||||||||||||   ||||  |||| |||| |||||||||| ||||||| |||||||||||||||| | | |||||||||||||||    
T  11532969 agaaggccacaaattaatattctccattctaatgttttggcatggtttattttgactgcattcaaaacttgctgcaacttttgtatttccacttcctcta 11532870  T
Q  108 atatatttgtaagctacgttgct 130  Q
    |||| ||||||||| || |||||    
T  11532869 atatttttgtaagccacattgct 11532847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 31575660 - 31575558
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatagaa---------cttttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaataca 379  Q
    ||||||||||||||||| ||||||||||||||||||||||         | ||||||||||||||||||||||||||| | |||||||||| | ||||||    
T  31575660 tagatctcaagtctattgggcttaatagtttgagatagaagagttccaacctttcttgtgtgatcaagaattgtagaagcttgctgaggttgataataca 31575561  T
Q  380 ggg 382  Q
    |||    
T  31575560 ggg 31575558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 18143684 - 18143642
Alignment:
Q  286 atttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  18143684 atttagttctcaagtctattgggcttaatagtttgagatagaa 18143642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 12925288 - 12925325
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  12925288 tagatctcaagtctattgggcttaatagtttgagatag 12925325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 20030113 - 20030150
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20030113 tagatctcaagtctatttggcttaatagtttgagatag 20030150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 20044752 - 20044789
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20044752 tagatctcaagtctattgggcttaatagtttgagatag 20044789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 42712431 - 42712394
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  42712431 tagatctcaagtctattgggcttaatagtttgagatag 42712394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 12767565 - 12767602
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    |||||||||||||||||  |||||||||||||||||||    
T  12767565 tagatctcaagtctattgagcttaatagtttgagatag 12767602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 4843977 - 4843937
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| | ||||||||||||||||||||    
T  4843977 ttagttctcaagtctattggccttaatagtttgagatagaa 4843937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 18232861 - 18232901
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  18232861 ttagttctcaagtctattgggctgaatagtttgagatagaa 18232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 18242312 - 18242352
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  18242312 ttagttctcaagtctattgggctgaatagtttgagatagaa 18242352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 18251763 - 18251803
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  18251763 ttagttctcaagtctattgggctgaatagtttgagatagaa 18251803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 18883413 - 18883373
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  18883413 ttagttctcaagtctattgggctgaatagtttgagatagaa 18883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 20714072 - 20714131
Alignment:
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    ||||||||||||| |||||||||||| | |||||| ||||| | |||||||||||| ||||    
T  20714072 aagaattgtagaagcctgctgaggttgataataca-ggtgtaacagactgatctggtgtga 20714131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 405
Target Start/End: Complemental strand, 26906445 - 26906371
Alignment:
Q  331 tttcttgtgtgatcaagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||||||||||||||||||||| ||  ||||||||||| | ||||||| |||| | |||||||||||| ||||    
T  26906445 tttcttgtgtgatcaagaattgtaaaagtctgctgaggttgataatacagagtgtaacagactgatctggtgtga 26906371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 14272271 - 14272234
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14272271 tagatctcaagtctattgggcttaatagtttgagatag 14272234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 14282137 - 14282100
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14282137 tagatctcaagtctattgggcttaatagtttgagatag 14282100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 3471190 - 3471153
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| || |||||||||||||||||    
T  3471190 tagatctcaagtctattgggtttaatagtttgagatag 3471153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 21919613 - 21919580
Alignment:
Q  293 tctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||| ||||||||||||||||||||    
T  21919613 tctcaagtctattgggcttaatagtttgagatag 21919580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5378610 - 5378550
Alignment:
Q  345 aagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    |||||||||||||  ||||||||||| | |||| ||||||| | |||||||||||| ||||    
T  5378610 aagaattgtagaagtctgctgaggtttataatatagggtgtaacagactgatctggtgtga 5378550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 21633503 - 21633555
Alignment:
Q  277 acaaagtgtatt-tagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||||||||| | ||| ||||||||||||| ||| ||||||||||||||||||    
T  21633503 acaaagtgtaatctaggtctcaagtctattgggcataatagtttgagatagaa 21633555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 2043 - 2080
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2043 tagatctcaagtctatttggcttaatagtttgagatag 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 2447 - 2410
Alignment:
Q  289 tagatctcaagtctattaggcttaatagtttgagatag 326  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2447 tagatctcaagtctattgggcttaatagtttgagatag 2410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 15002 - 14939
Alignment:
Q  342 atcaagaattgtagaaacctgctgaggttaacaatacagggtgtcatagactgatctggcgtga 405  Q
    ||||||||| |||||| |||||||||||| | ||||||| |||| | |||||||||||| ||||    
T  15002 atcaagaatcgtagaagcctgctgaggttgataatacagagtgtaacagactgatctggtgtga 14939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 9982 - 10017
Alignment:
Q  293 tctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||||||||||||| |||||||||||||||||||||    
T  9982 tctcaagtctattatgcttaatagtttgagatagaa 10017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 256892 - 256932
Alignment:
Q  288 ttagatctcaagtctattaggcttaatagtttgagatagaa 328  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  256892 ttagttctcaagtctattgggctgaatagtttgagatagaa 256932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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