View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5030-Insertion-8 (Length: 200)

Name: NF5030-Insertion-8
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5030-Insertion-8
NF5030-Insertion-8
[»] chr6 (4 HSPs)
chr6 (8-200)||(14572973-14573172)
chr6 (138-197)||(30794174-30794233)
chr6 (138-197)||(12461411-12461470)
chr6 (138-197)||(17751726-17751785)
[»] chr2 (10 HSPs)
chr2 (138-197)||(44455109-44455168)
chr2 (146-197)||(19264220-19264271)
chr2 (138-197)||(35023018-35023077)
chr2 (138-195)||(24204510-24204567)
chr2 (141-197)||(9864702-9864758)
chr2 (134-193)||(7645204-7645263)
chr2 (155-197)||(5963320-5963362)
chr2 (138-191)||(32428100-32428153)
chr2 (147-175)||(4891628-4891656)
chr2 (138-194)||(11825340-11825396)
[»] chr3 (11 HSPs)
chr3 (138-197)||(47115973-47116032)
chr3 (144-197)||(26208138-26208191)
chr3 (146-197)||(7866432-7866483)
chr3 (146-197)||(9264675-9264726)
chr3 (146-197)||(29235311-29235362)
chr3 (146-197)||(47864315-47864366)
chr3 (146-197)||(50730233-50730284)
chr3 (146-197)||(50782570-50782621)
chr3 (146-197)||(54464845-54464896)
chr3 (147-197)||(6075205-6075255)
chr3 (146-175)||(6784760-6784789)
[»] scaffold0005 (1 HSPs)
scaffold0005 (138-184)||(233469-233515)
[»] chr4 (10 HSPs)
chr4 (138-184)||(14583860-14583906)
chr4 (141-197)||(50080434-50080490)
chr4 (136-197)||(12002606-12002667)
chr4 (146-197)||(4058833-4058884)
chr4 (146-197)||(29203624-29203675)
chr4 (138-172)||(17794516-17794550)
chr4 (138-195)||(17799109-17799166)
chr4 (138-191)||(20716304-20716357)
chr4 (138-175)||(28142597-28142634)
chr4 (138-166)||(50145869-50145897)
[»] chr1 (9 HSPs)
chr1 (137-197)||(15959621-15959681)
chr1 (138-196)||(47302890-47302948)
chr1 (146-198)||(28016736-28016788)
chr1 (138-172)||(298650-298684)
chr1 (138-172)||(1035000-1035034)
chr1 (138-172)||(3860682-3860716)
chr1 (136-172)||(16661752-16661788)
chr1 (133-197)||(43667280-43667344)
chr1 (141-197)||(52985053-52985109)
[»] chr8 (5 HSPs)
chr8 (146-197)||(7499833-7499884)
chr8 (138-191)||(44663775-44663828)
chr8 (146-197)||(7858646-7858697)
chr8 (146-197)||(34890165-34890216)
chr8 (138-196)||(40773386-40773444)
[»] chr7 (3 HSPs)
chr7 (136-193)||(44683001-44683058)
chr7 (146-197)||(18102650-18102701)
chr7 (146-197)||(19912758-19912809)
[»] scaffold0045 (1 HSPs)
scaffold0045 (146-197)||(78077-78128)
[»] chr5 (6 HSPs)
chr5 (146-197)||(6686505-6686556)
chr5 (146-197)||(20644134-20644185)
chr5 (146-199)||(9957425-9957478)
chr5 (149-197)||(20039222-20039270)
chr5 (136-172)||(28907305-28907341)
chr5 (136-172)||(28943700-28943736)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 14572973 - 14573172
Alignment:
Q  8 gatacacgtagattcagatctatgtcggtatatacatacgtgtaaagttacaagctagctagtgtcaaaaactttgccacagtttaagggtacactgttt 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14572973 gatacacgtagattcagatccatgtcggtatatacatacgtgtaaagttacaagctagctagtgtcaaaaactttgccacagtttaagggcacactgttt 14573072  T
Q  108 tatataattaatactctctctatcctaaat-------aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataatttttgta 200  Q
    ||||||||||||||||||||| || |||||       |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  14573073 tatataattaatactctctctgtcgtaaatcgtaaggaaaaaatcaaatcacatttattaagaaaactaaaatatatgaatttggagtataatttttgta 14573172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 30794174 - 30794233
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||  ||||||||||||    
T  30794174 aaaaaatcaaatcagatttattaagaaaactaaaatataagaatttgaagtataattttt 30794233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 12461411 - 12461470
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||| || |||| |||||    
T  12461411 aaaaaatcaaatcacatttattaagaaaactaaaacatgagaatttggaatatagttttt 12461470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 17751726 - 17751785
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||||||||||| |||||||||||| ||||||||  |||||| ||||||| |||||    
T  17751726 aaaaaatcaaatcacacttattaagaaaattaaaatataagaatttggagtatagttttt 17751785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 44455168 - 44455109
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||    
T  44455168 aaaaaatcaaatcatatttattaagaaaactaaaatatatgaatttggagtatagttttt 44455109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 19264271 - 19264220
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  19264271 aaatcacacttattaagaaaactaaaacataagaatttagagtataattttt 19264220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 35023077 - 35023018
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||||| ||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  35023077 aaaaaatcaattcacacttattaagaaaactaaaacataagaatttggagtataattttt 35023018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 24204510 - 24204567
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattt 195  Q
    ||||||||||||||||||||| |||||||||||||  |  |||||| |||||||||||    
T  24204510 aaaaaatcaaatcacatttatcaagaaaactaaaacctaagaatttggagtataattt 24204567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 9864702 - 9864758
Alignment:
Q  141 aaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||| |||||||||||||||||| ||  |||||| ||||||| |||||    
T  9864702 aaatcaaatcacacttattaagaaaactaaaacataagaatttggagtatagttttt 9864758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 7645204 - 7645263
Alignment:
Q  134 aaataaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataat 193  Q
    ||||||||||  |||||||| |||||||||||||||||| ||  |||||| |||||||||    
T  7645204 aaataaaaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagtataat 7645263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 5963362 - 5963320
Alignment:
Q  155 ttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||||||||||||||||  ||||||||||| ||||||||    
T  5963362 ttattaagaaaactaaaatataagaatttagagtctaattttt 5963320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 32428153 - 32428100
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtata 191  Q
    |||||||||||||| ||||||||| |||||||||| ||  |||||| |||||||    
T  32428153 aaaaaatcaaatcatatttattaaaaaaactaaaacataagaatttggagtata 32428100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 4891628 - 4891656
Alignment:
Q  147 aatcacatttattaagaaaactaaaatat 175  Q
    |||||||||||||||||||||||||||||    
T  4891628 aatcacatttattaagaaaactaaaatat 4891656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 11825340 - 11825396
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataatt 194  Q
    ||||| |||||||||| |||||||||||||||||| ||  |||||| || |||||||    
T  11825340 aaaaactcaaatcacacttattaagaaaactaaaacataagaattttgaatataatt 11825396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 47116032 - 47115973
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||| |||||||||||||||| |||||||||| ||  ||||||||||||||||||||    
T  47116032 aaaaaatgaaatcacatttattaaaaaaactaaaacataagaatttagagtataattttt 47115973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 26208191 - 26208138
Alignment:
Q  144 tcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||||| |||||||||||||||||| ||  |||||||||||||| |||||    
T  26208191 tcaaatcacacttattaagaaaactaaaacataagaatttagagtatagttttt 26208138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 7866432 - 7866483
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||||||||||| |||||    
T  7866432 aaatcacacttattaagaaaactaaaacataagaatttagagtatagttttt 7866483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 9264726 - 9264675
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| || ||||||| ||||||| |||||    
T  9264726 aaatcacacttattaagaaaactaaaacatatgaattttgagtatagttttt 9264675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 29235362 - 29235311
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||||||||||| |||||    
T  29235362 aaatcacacttattaagaaaactaaaacataagaatttagagtatagttttt 29235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 47864366 - 47864315
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  47864366 aaatcacatttattaagaaaactaaaacatgagaatttggagtatagttttt 47864315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 50730284 - 50730233
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  50730284 aaatcacatttattaagaaaactaaaacataagaatttggagtatagttttt 50730233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 50782570 - 50782621
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  50782570 aaatcacatttattaagaaaactaaaacataagaatttggagtatagttttt 50782621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 54464845 - 54464896
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  ||||||  ||||||||||||    
T  54464845 aaatcacatttattaagaaaactaaaacataagaatttgaagtataattttt 54464896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 6075255 - 6075205
Alignment:
Q  147 aatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||| ||||||||||||||||| |||  |||||| |||||||||||||    
T  6075255 aatcacacttattaagaaaactaaagtataagaatttggagtataattttt 6075205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 6784789 - 6784760
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatat 175  Q
    ||||||||||||||||||||||||||||||    
T  6784789 aaatcacatttattaagaaaactaaaatat 6784760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 233469 - 233515
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaattta 184  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  233469 aaaaaatcaaatcacatttattaagaaaactaaaatataagaattta 233515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 14583906 - 14583860
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaattta 184  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  14583906 aaaaaatcaaatcacatttattaagaaaactaaaatataagaattta 14583860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 50080434 - 50080490
Alignment:
Q  141 aaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  50080434 aaatcaaatcacacttattaagaaaactaaaacataagaattttgagtataattttt 50080490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 12002606 - 12002667
Alignment:
Q  136 ataaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||| |||||||||| |||||||||||||||||| ||  |||||| ||||||| |||||    
T  12002606 ataaaaactcaaatcacacttattaagaaaactaaaacataagaatttggagtatagttttt 12002667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 4058884 - 4058833
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  4058884 aaatcacatttattaagaaaactaaaacataagaatttggagtatagttttt 4058833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 29203675 - 29203624
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  29203675 aaatcacacttattaagaaaactaaaacataagaatttggagtataattttt 29203624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 17794516 - 17794550
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    |||||||||||||||| ||||||||||||||||||    
T  17794516 aaaaaatcaaatcacacttattaagaaaactaaaa 17794550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 17799109 - 17799166
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattt 195  Q
    |||||||||  ||| |||||||||||||||||||||||   ||||| |||||||||||    
T  17799109 aaaaaatcatttcatatttattaagaaaactaaaatatgataatttggagtataattt 17799166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 20716357 - 20716304
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtata 191  Q
    ||||||| |||||||| |||||||||||||||||| ||  |||||| |||||||    
T  20716357 aaaaaataaaatcacacttattaagaaaactaaaacataagaatttggagtata 20716304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 28142597 - 28142634
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatat 175  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  28142597 aaaaaataaaatcacacttattaagaaaactaaaatat 28142634  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 50145897 - 50145869
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaa 166  Q
    |||||||||||||||||||||||||||||    
T  50145897 aaaaaatcaaatcacatttattaagaaaa 50145869  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 15959621 - 15959681
Alignment:
Q  137 taaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||  ||||||||||||||||||||||||||| ||  |||||| |||||||||||||    
T  15959621 taaaaaaaaaaatcacatttattaagaaaactaaaacataagaatttggagtataattttt 15959681  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 47302890 - 47302948
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataatttt 196  Q
    |||||||||||| |||||| ||||||||||||||||||  ||| || ||||||||||||    
T  47302890 aaaaaatcaaataacatttgttaagaaaactaaaatataagaaattggagtataatttt 47302948  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 28016736 - 28016788
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataatttttg 198  Q
    |||||||| |||||||||||||||||| ||  |||||||||||||| ||||||    
T  28016736 aaatcacacttattaagaaaactaaaacataagaatttagagtatagtttttg 28016788  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 298650 - 298684
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    |||||||||||||| ||||||||||||||||||||    
T  298650 aaaaaatcaaatcatatttattaagaaaactaaaa 298684  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 1035034 - 1035000
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    ||||||||||||||||||||||||||||| |||||    
T  1035034 aaaaaatcaaatcacatttattaagaaaattaaaa 1035000  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 3860682 - 3860716
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    |||||||||||||||| ||||||||||||||||||    
T  3860682 aaaaaatcaaatcacacttattaagaaaactaaaa 3860716  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 16661788 - 16661752
Alignment:
Q  136 ataaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    ||||||||  |||||||||||||||||||||||||||    
T  16661788 ataaaaaaaaaaatcacatttattaagaaaactaaaa 16661752  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 43667280 - 43667344
Alignment:
Q  133 taaataaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||| ||||||  ||||||||||||||||||||| ||| | ||  ||||||| ||||||||||||    
T  43667280 taaacaaaaaaaaaaatcacatttattaagaaaattaagacataagaatttaaagtataattttt 43667344  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 52985109 - 52985053
Alignment:
Q  141 aaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||| |||||||||||||||| | ||  |||||| ||||||| |||||    
T  52985109 aaatcaaatcacacttattaagaaaactaatacataagaatttggagtatagttttt 52985053  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 7499884 - 7499833
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  7499884 aaatcacatttattaagaaaactaaaacataggaatttagagtataactttt 7499833  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 44663775 - 44663828
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtata 191  Q
    ||||||| |||||||| ||||||||||||||||| |||  ||||||||||||||    
T  44663775 aaaaaattaaatcacacttattaagaaaactaaattataagaatttagagtata 44663828  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 7858697 - 7858646
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  7858697 aaatcacatttattaagaaaactaaaacataagaatttggagtatagttttt 7858646  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 34890165 - 34890216
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  34890165 aaatcacacttattaagaaaactaaaacataagaatttggagtataattttt 34890216  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 40773386 - 40773444
Alignment:
Q  138 aaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataatttt 196  Q
    |||||| ||| ||||||||||||| |||||||||||||   ||||| ||||||||||||    
T  40773386 aaaaaaacaattcacatttattaaaaaaactaaaatataacaatttggagtataatttt 40773444  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 44683058 - 44683001
Alignment:
Q  136 ataaaaaatcaaatcacatttattaagaaaactaaaatatttgaatttagagtataat 193  Q
    |||||||||||||||||||| ||||||||||||| || ||  |||||| |||||||||    
T  44683058 ataaaaaatcaaatcacattcattaagaaaactagaaaataagaatttggagtataat 44683001  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 18102701 - 18102650
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  18102701 aaatcacacttattaagaaaactaaaacataagaatttggagtataattttt 18102650  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 19912758 - 19912809
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  19912758 aaatcacatttattaagaaaactaaaacataagaatttggagtatagttttt 19912809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 78128 - 78077
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||||||||||| |||||    
T  78128 aaatcacacttattaagaaaactaaaacataagaatttagagtatagttttt 78077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 6686556 - 6686505
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| |||||    
T  6686556 aaatcacatttattaagaaaactaaaacataagaatttggagtatagttttt 6686505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 20644185 - 20644134
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    |||||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  20644185 aaatcacacttattaagaaaactaaaacataagaatttggagtataattttt 20644134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 9957425 - 9957478
Alignment:
Q  146 aaatcacatttattaagaaaactaaaatatttgaatttagagtataatttttgt 199  Q
    |||||||| |||||||||||||||||| ||  |||||| ||||||| |||||||    
T  9957425 aaatcacacttattaagaaaactaaaacatgagaatttggagtatagtttttgt 9957478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 20039270 - 20039222
Alignment:
Q  149 tcacatttattaagaaaactaaaatatttgaatttagagtataattttt 197  Q
    ||||| |||||||||||||||||| ||  |||||| |||||||||||||    
T  20039270 tcacacttattaagaaaactaaaacataagaatttggagtataattttt 20039222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 28907341 - 28907305
Alignment:
Q  136 ataaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    ||||||||  |||||||||||||||||||||||||||    
T  28907341 ataaaaaaaaaaatcacatttattaagaaaactaaaa 28907305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 28943736 - 28943700
Alignment:
Q  136 ataaaaaatcaaatcacatttattaagaaaactaaaa 172  Q
    ||||||||  |||||||||||||||||||||||||||    
T  28943736 ataaaaaaaaaaatcacatttattaagaaaactaaaa 28943700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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