View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5030_high_6 (Length: 336)
Name: NF5030_high_6
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030_high_6 |
 | |
|
| [»] scaffold1126 (1 HSPs) |
| | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 26314068 - 26314381
Alignment:
| Q |
10 |
aagaaaatagaacgggaagagttatctaataaacaacgaagcatgattagttacatgactataatacagtgttgaaataatttaagaaccatgaaaacaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26314068 |
aagaatatagaacgggaagagttatctaataaacaacgaagcatgattagttacatgactataatacaatgttgaaataatttaagaaccatgaaaacaa |
26314167 |
T |
|
| Q |
110 |
tatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactaacattaatc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26314168 |
tatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactagcattaatc |
26314267 |
T |
|
| Q |
210 |
aatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattgagacaaaaattggaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26314268 |
aatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagacaaaaattggaaa |
26314367 |
T |
|
| Q |
310 |
atgatgatgaaaat |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26314368 |
atgatgatgaaaat |
26314381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 95 - 322
Target Start/End: Original strand, 28584239 - 28584463
Alignment:
| Q |
95 |
gaaccatgaaaacaatatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcaccca |
194 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
28584239 |
gaaccatgagaacaatattgcctaactgaaattacaaa-tcaatatgttgtacataaacaaca--gattacaatatttgaaaatgtactaattacaccca |
28584335 |
T |
|
| Q |
195 |
ccactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattga |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28584336 |
acactaacattaatcaatgacttgacatgttcctggagattagagaggcttggtttgctcttatagtggtacatgaggggaaccattctagcagcattca |
28584435 |
T |
|
| Q |
295 |
gacaaaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
28584436 |
gacaaaagttggaaaatgatgatgaaaa |
28584463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 94 - 322
Target Start/End: Original strand, 28573007 - 28573233
Alignment:
| Q |
94 |
agaaccatgaaaacaatatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcaccc |
193 |
Q |
| |
|
|||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||| |
|
|
| T |
28573007 |
agaaccatgagaacaatattgcctaatttaaattacaaaatcaatatgttgtacataaacaaca--gaacacaatatctgaaaatgtactaattacaccc |
28573104 |
T |
|
| Q |
194 |
accactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattg |
293 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28573105 |
aacactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattcttgcagcattg |
28573204 |
T |
|
| Q |
294 |
agacaaaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |
|
|
| T |
28573205 |
agacaaaagttggaaaatgacgatgaaaa |
28573233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 161 - 322
Target Start/End: Original strand, 28566327 - 28566488
Alignment:
| Q |
161 |
atcacaatatttgaaaatgtactaattgcacccaccactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatag |
260 |
Q |
| |
|
||||||| |||| || |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28566327 |
atcacaaaatttaaagatgtactaattgcacccaacactaacattaatcaatgagttaacatgttcctggagattagagaggctcgggttgctcttatag |
28566426 |
T |
|
| Q |
261 |
tggtacatgaggggaaccattctagcagcattgagacaaaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28566427 |
tggtacatgaggggaaccattctagcagcattgagacaaaaattggaaaatgatgatgaaaa |
28566488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 323
Target Start/End: Original strand, 20615035 - 20615154
Alignment:
| Q |
204 |
ttaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattgagacaaaaat |
303 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
20615035 |
ttaatcaatgacttgacatgttcctttagactagagaggcttgggttgctcttataatggtacatgagaggaaccattctagcagcattaaggcaaaaat |
20615134 |
T |
|
| Q |
304 |
tggaaaatgatgatgaaaat |
323 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
20615135 |
tggtaaatgatgatggaaat |
20615154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 2436 - 2722
Alignment:
| Q |
10 |
aagaaaatagaacgggaagagttatctaataaacaacgaagcatgattagttacatgactataatacagtgttgaaataatttaagaaccatgaaaacaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2436 |
aagaatatagaacgggaagagttatctaataaacaacgaagcatgattagttacatgactataatacaatgttgaaataatttaagaaccatgaaaacaa |
2535 |
T |
|
| Q |
110 |
tatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactaacattaatc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2536 |
tatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactagcattaatc |
2635 |
T |
|
| Q |
210 |
aatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattgaga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2636 |
aatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgaga |
2722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 94 - 322
Target Start/End: Original strand, 24069699 - 24069925
Alignment:
| Q |
94 |
agaaccatgaaaacaatatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcaccc |
193 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||| || |
|
|
| T |
24069699 |
agaaccatgacaacaatatttcctagtataaattacaaaatcaatatgttatacataaacaaca--gatcacaatatatgagtatgtactaattgcatcc |
24069796 |
T |
|
| Q |
194 |
accactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattg |
293 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
24069797 |
aacaccaacattaatcaatgacttgacatgttcctggagattagagaggcttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattg |
24069896 |
T |
|
| Q |
294 |
agacaaaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24069897 |
agacaaaaattggaaaatgatgatgaaaa |
24069925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 82 - 322
Target Start/End: Complemental strand, 24081050 - 24080811
Alignment:
| Q |
82 |
tgaaataatttaagaaccatgaaaacaatatttcctaactgaaattacaaaatcaatat--gttgtacataaacaactatgatcacaatatttgaaaatg |
179 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||||||| || |
|
|
| T |
24081050 |
tgaaataacttaagaaccatgaaaacaataatgcccaactgaaattacaaa-tcaatatatgttgtacataaacaaca--gattacaatatttgaaactg |
24080954 |
T |
|
| Q |
180 |
tactaattgcacccaccactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaacca |
279 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24080953 |
tactaattgcatccaacaccaacattaatcaataacttgacatgttcctagagattagataggctagggttgctcttatagtggtacatgaggggaacca |
24080854 |
T |
|
| Q |
280 |
ttctagcagcattgagacaaaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24080853 |
ttcttgcagcattgatacaaaaattggaaaatgatgatgaaaa |
24080811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 131 - 322
Target Start/End: Complemental strand, 654 - 465
Alignment:
| Q |
131 |
aaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactaacattaatcaatgacttgacatgttcctgg |
230 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
654 |
aaatcaatgtgttgtacataaacaaca--gatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatgg |
557 |
T |
|
| Q |
231 |
agattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattgagacaaaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
556 |
agattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgaaaa |
465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 94 - 298
Target Start/End: Complemental strand, 203 - 1
Alignment:
| Q |
94 |
agaaccatgaaaacaatatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcaccc |
193 |
Q |
| |
|
|||||||||| ||||||||| ||||| | ||||||||||||||||||||||| |||||||||| || | ||||| ||||||||| | ||||| || || |
|
|
| T |
203 |
agaaccatgagaacaatattgcctaatttaaattacaaaatcaatatgttgtgcataaacaac-ataa-cacaaggtttgaaaatatgctaatcgcgtcc |
106 |
T |
|
| Q |
194 |
accactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattg |
293 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105 |
aacaccaacattaatcaatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattg |
6 |
T |
|
| Q |
294 |
agaca |
298 |
Q |
| |
|
||||| |
|
|
| T |
5 |
agaca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 94 - 298
Target Start/End: Complemental strand, 203 - 1
Alignment:
| Q |
94 |
agaaccatgaaaacaatatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcaccc |
193 |
Q |
| |
|
|||||||||| ||||||||| ||||| | ||||||||||||||||||||||| |||||||||| || | ||||| ||||||||| | ||||| || || |
|
|
| T |
203 |
agaaccatgagaacaatattgcctaatttaaattacaaaatcaatatgttgtgcataaacaac-ataa-cacaaggtttgaaaatatgctaatcgcgtcc |
106 |
T |
|
| Q |
194 |
accactaacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattg |
293 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105 |
aacaccaacattaatcaatgacttgacatgttcctggagattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattg |
6 |
T |
|
| Q |
294 |
agaca |
298 |
Q |
| |
|
||||| |
|
|
| T |
5 |
agaca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 152 - 1
Alignment:
| Q |
94 |
agaaccatgaaaacaatatttcctaactgaaattacaaaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcaccc |
193 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||| || | |||||| |||||||||||||||||||| || |
|
|
| T |
152 |
agaaccatgaaaacaatatttcctaattcaaattacaaaatcaatatgttgtgcagaaacaac-ataa-cacaatgtttgaaaatgtactaattgcgtcc |
55 |
T |
|
| Q |
194 |
accactaacattaatcaatgacttgacatgttcctggagattagagaggcttgg |
247 |
Q |
| |
|
| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54 |
aacaccaacgttaatcaatgacttgacatgttcctggagattagagaggcttgg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 2603357 - 2603234
Alignment:
| Q |
199 |
taacattaatcaatgacttgacatgttcctggagattagagaggcttgggttgctcttatagtggtacatgaggggaaccattctagcagcattgagaca |
298 |
Q |
| |
|
||||||||| ||||||||||||| | || || ||||| || || ||||| || |||| ||||| |||||||| ||||||||||| ||| |||| || || |
|
|
| T |
2603357 |
taacattaaccaatgacttgacaaggtcttgtagattggaaagacttggattactctggtagtgatacatgagaggaaccattcttgcaacattaaggca |
2603258 |
T |
|
| Q |
299 |
aaaattggaaaatgatgatgaaaa |
322 |
Q |
| |
|
||| |||| ||||||||| ||||| |
|
|
| T |
2603257 |
aaatttggtaaatgatgacgaaaa |
2603234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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