View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5030_low_1 (Length: 485)
Name: NF5030_low_1
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 14572519 - 14572977
Alignment:
| Q |
12 |
atgagatggtgtattgacaaaaatctaaatccgatataaaaatgatatgtttttgataaaagtttataaatagcgactcctcttatttgataaaccagtc |
111 |
Q |
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| T |
14572519 |
atgagaaggtgtattgacaaaaatctaagtccgatataaaaatgatatatttttgataaaagtttataaatagcgactcctcttatttgataaaccagtt |
14572618 |
T |
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| Q |
112 |
atgtaaggatgaaataaatccaatatttnnnnnnnnnnnccaatattataactttcaaaattaagaatggaaaaatattctgaaacatgaaaatcaatca |
211 |
Q |
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| T |
14572619 |
atgtaaggatgaagtaaactcaatattttaaaaaaaa--ccaatattataactttcaaaattaagaatggaaaaatattctgaaacatgaaaatcaatca |
14572716 |
T |
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| Q |
212 |
gcaaagaggattatgttaattatgatgattat---aagaatgaagataattaattcataccttctctttagattccagttgcaaagaacgtagtattgtg |
308 |
Q |
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| T |
14572717 |
gcaaagaggattatgttaactatgatgatgatgataagaatgaagataattaattcataccttctctttagattccagttgcaaagaacgtagtattgtg |
14572816 |
T |
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| Q |
309 |
ttaatttcttttcttggtatgctatgccaattttcttctttcatagagaacttgaatttgtgggcactcttttttcttgagcctcttctcttatataatt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
14572817 |
ttaatttcttttcttggtatgctatgccaattttcttctttcatagagaacctgaatttgtggccactcttttttcttgagcctcttctcttatacaatt |
14572916 |
T |
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| Q |
409 |
gaaatggttattattattgtattattagttaatacaaaaatacgaaaacaatacatgatac |
469 |
Q |
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| T |
14572917 |
gaaatggttattattattgtattattagttaatacaaaattacgaaaacaatacatgatac |
14572977 |
T |
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