View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5030_low_2 (Length: 476)
Name: NF5030_low_2
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 237 - 466
Target Start/End: Original strand, 31761163 - 31761401
Alignment:
| Q |
237 |
tatacgttcgtataaaagtgaattgaacgataaatttatgggtaaaattcatgttttgacgaaaaactacaaatcctaaatttaagttagaattagttta |
336 |
Q |
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| T |
31761163 |
tatacgttcatataaaagtgaattgaacgataaatttatgggtaaaattcatgttttgaggaaaaactacaaatcctaaatttaagttagaattagttta |
31761262 |
T |
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| Q |
337 |
gatgtaaa-gtcattgtaattgaaaacacccaaccataccaaaatcaattttaaagcttctaatcaatttcaaa--------tctccagtcccaaatgta |
427 |
Q |
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| T |
31761263 |
gatgtaaacgtcattgcaattgaaaacacccaaccataccaaaatcaattttaaagcttctaatcaatttcaaaatttcaattctccagtcccaaatgta |
31761362 |
T |
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| Q |
428 |
acccaatcatgcactagttgtgtttaactatcacctttg |
466 |
Q |
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| T |
31761363 |
acccaatcatgcactagttgtgtttaactatcacctttg |
31761401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 31760944 - 31761097
Alignment:
| Q |
18 |
cagcaacatgtttgttttctcctctctccttgttactagtaattctttatctttacagcacacactacacaatgtatgtactctgtttcaaccacttcta |
117 |
Q |
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| T |
31760944 |
cagcaacatgtttgttttctcctctctccttgttactagtaattctttatctttacagcacacactacacaatgtatgtactctgtttcaaccacttcta |
31761043 |
T |
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| Q |
118 |
ctattatttatatttgatcnnnnnnnatgtatatggttggttggtactagtgtg |
171 |
Q |
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| T |
31761044 |
ctattatttatattttaactttttttaagtatatggttggttggtactagtgtg |
31761097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 7280575 - 7280539
Alignment:
| Q |
247 |
tataaaagtgaattgaacgataaatttatgggtaaaa |
283 |
Q |
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| T |
7280575 |
tataaaagtgaattgaacgataaatttgtgtgtaaaa |
7280539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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