View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5030_low_3 (Length: 399)
Name: NF5030_low_3
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 85 - 358
Target Start/End: Original strand, 14571904 - 14572177
Alignment:
| Q |
85 |
gccaattcttaatcaactttcaaatgcatctcaaaacgaagcattttcttagtgaaaaatacaaagtacttaattggttaattgcttttgttataaacaa |
184 |
Q |
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| T |
14571904 |
gccaattcttaatcaactttgaaatgcatctcaaaacaaagcattttcttagtgaaaaatacaaagtacttaattggttaattgcttttgttataaacaa |
14572003 |
T |
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| Q |
185 |
tggtagatcccaatgaactgaatattgtttcgatagaatggaagaagtaagtatatcaaagtataaaatgagacttatatactctataagtattttctta |
284 |
Q |
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| T |
14572004 |
tggtagagcccaatgaactgaatattgtttcgatagaatggaagaagtaagtatatcaaagtataaaatgagacttatatactctaaaagtattttctta |
14572103 |
T |
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| Q |
285 |
ggattaattagattcaatatttaatatctaatatgatattagagtttatcgattatgaccatccataatttata |
358 |
Q |
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| T |
14572104 |
ggattaattagattcaatatttaatatctaatatgatattagagtttatcgattatgactatctataatttata |
14572177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 14572481 - 14572530
Alignment:
| Q |
350 |
taatttatatacatgcattaaatctaataacgttgagcatgagatggtgt |
399 |
Q |
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| T |
14572481 |
taatttatatacatgcatcaaatctaataacgttgagcatgagaaggtgt |
14572530 |
T |
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