View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5030_low_6 (Length: 337)
Name: NF5030_low_6
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 54972653 - 54972958
Alignment:
| Q |
22 |
ccaaacttatgtagcactgatacttcaaattgaaagtgtgttagtgtttggttagtaacaccgacacttattgttacattcaatcactctattttcttaa |
121 |
Q |
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| T |
54972653 |
ccaaacttatgtagcactgatacttcaaattgaaagtgtgttagtgtttggttagtaacaccaacacttattgttacattcaatcactctattttcttaa |
54972752 |
T |
|
| Q |
122 |
actattacctatatctacgtgatagtgtcactatcgtgtttacgttagtgcttcataggatcaaactataagcaactactatgcttataatgaatggaac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54972753 |
actattacctatatctacgtgatagtgtcactatcgtgtttgcgttagtgcttcataggatcaaactataagcaactactatgcttataatgaatggaac |
54972852 |
T |
|
| Q |
222 |
aattgagaaaatggtgaaagaataagaaaagaaaaacttacagcaggctttgctcgtcgcttagttaaagggaagagacgggttccagctcctccaccaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54972853 |
aattgagaaaatggtgaaagaataagaaaagaaaaacttacagcaggctttgctcgtcgcttagttaaagggaagagacgggttccagctcctccaccaa |
54972952 |
T |
|
| Q |
322 |
gtataa |
327 |
Q |
| |
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|||||| |
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| T |
54972953 |
gtataa |
54972958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 18421261 - 18421311
Alignment:
| Q |
92 |
ttgttacattcaatcactctattttcttaaactattacctatatctacgtg |
142 |
Q |
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||||| ||||| ||||||||||||||||||| ||||| || |||||||||| |
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| T |
18421261 |
ttgtttcattcgatcactctattttcttaaattattatctctatctacgtg |
18421311 |
T |
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