View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5030_low_8 (Length: 286)
Name: NF5030_low_8
Description: NF5030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5030_low_8 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 279278 - 279492
Alignment:
| Q |
73 |
gaaatgttgatgttggtattgatggaaaaataagatgaatacaaacactgtttcattatgttcttccttatttgattttgtcattgtcataaatggacct |
172 |
Q |
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| T |
279278 |
gaaatgttggtgttggtattgatggaaaaataagatgaatacaaacactgtttcattgtgttcttccttatttgattttgtcatcgtcataaatggacct |
279377 |
T |
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| Q |
173 |
ttaaattttgaatcatatgggaattgaaagatttatgacaataattaggacctttttgttattatgttagttttattttaacc-gatgttacgattattc |
271 |
Q |
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| T |
279378 |
ttaaattttgaatcatatgggaattgaaagatttatgacaataattaggacctttttgttattatgttagttttattttaacctgatgttacgattattc |
279477 |
T |
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| Q |
272 |
tatgaacgtctctta |
286 |
Q |
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||||||||||||||| |
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| T |
279478 |
tatgaacgtctctta |
279492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 286
Target Start/End: Complemental strand, 636574 - 636360
Alignment:
| Q |
73 |
gaaatgttgatgttggtattgatggaaaaataagatgaatacaaacactgtttcattatgttcttccttatttgattttgtcattgtcataaatggacct |
172 |
Q |
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| T |
636574 |
gaaatgttggtgttggtattgatggaaaaataagatgaatacaaacactgtttcattgtgttcttccttatttgattttgtcatcgtcataaatggacct |
636475 |
T |
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| Q |
173 |
ttaaattttgaatcatatgggaattgaaagatttatgacaataattaggacctttttgttattatgttagttttattttaacc-gatgttacgattattc |
271 |
Q |
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| T |
636474 |
ttaaattttgaatcatatgggaattgaaagatttatgacaataattaggacctttttgttattatgttagttttattttaacctgatgttacgattattc |
636375 |
T |
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| Q |
272 |
tatgaacgtctctta |
286 |
Q |
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| T |
636374 |
tatgaacgtctctta |
636360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 286
Target Start/End: Complemental strand, 822377 - 822163
Alignment:
| Q |
73 |
gaaatgttgatgttggtattgatggaaaaataagatgaatacaaacactgtttcattatgttcttccttatttgattttgtcattgtcataaatggacct |
172 |
Q |
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| T |
822377 |
gaaatgttggtgttggtattgatggaaaaataagatgaatacaaacactgtttcattgtgttcttccttatttgattttgtcatcgtcataaatggacct |
822278 |
T |
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| Q |
173 |
ttaaattttgaatcatatgggaattgaaagatttatgacaataattaggacctttttgttattatgttagttttattttaacc-gatgttacgattattc |
271 |
Q |
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| T |
822277 |
ttaaattttgaatcatatgggaattgaaagatttatgacaataattaggacctttttgttattatgttagttttattttaacctgatgttacgattattc |
822178 |
T |
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| Q |
272 |
tatgaacgtctctta |
286 |
Q |
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| T |
822177 |
tatgaacgtctctta |
822163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 279222 - 279259
Alignment:
| Q |
14 |
gcgacagacatgtgtccttaatgctaacaatgttggtg |
51 |
Q |
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| T |
279222 |
gcgacagacatgtgtccttaatgctaacaattttggtg |
279259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 636630 - 636593
Alignment:
| Q |
14 |
gcgacagacatgtgtccttaatgctaacaatgttggtg |
51 |
Q |
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| T |
636630 |
gcgacagacatgtgtccttaatgctaacaattttggtg |
636593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 822433 - 822396
Alignment:
| Q |
14 |
gcgacagacatgtgtccttaatgctaacaatgttggtg |
51 |
Q |
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| T |
822433 |
gcgacagacatgtgtccttaatgctaacaattttggtg |
822396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 24787285 - 24787407
Alignment:
| Q |
133 |
ttcttccttatttgattttgtcattgtcataaatggacctttaaattttgaatcatatgggaattgaaagatttatgacaataattagga-cctttttgt |
231 |
Q |
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| T |
24787285 |
ttcttccttctttgattttgtcattgttgtatttgaac-ttaaaattttgaatcctatgagagttgaaagatttatgacaataattagcatcttttttgt |
24787383 |
T |
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| Q |
232 |
tattatgttagttttattttaacc |
255 |
Q |
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| T |
24787384 |
tattatgttagttttattttaacc |
24787407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 11441309 - 11441359
Alignment:
| Q |
86 |
tggtattgatggaaaaataagatgaatacaaacactgtttcattatgttct |
136 |
Q |
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| T |
11441309 |
tggtattgatggaaaaataagatgaatacaaacgctatttaattgtgttct |
11441359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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