View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5031-Insertion-1 (Length: 1111)

Name: NF5031-Insertion-1
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5031-Insertion-1
NF5031-Insertion-1
[»] chr8 (4 HSPs)
chr8 (544-1100)||(12023982-12024527)
chr8 (8-200)||(12024884-12025076)
chr8 (297-474)||(12024613-12024793)
chr8 (730-819)||(39421566-39421655)
[»] chr7 (6 HSPs)
chr7 (734-819)||(38603060-38603145)
chr7 (734-819)||(37757445-37757530)
chr7 (734-819)||(37763193-37763278)
chr7 (734-774)||(25584016-25584056)
chr7 (729-762)||(7655100-7655133)
chr7 (68-117)||(28872105-28872154)
[»] chr4 (1 HSPs)
chr4 (731-779)||(9521838-9521886)
[»] chr1 (3 HSPs)
chr1 (742-792)||(48741408-48741458)
chr1 (731-792)||(50332604-50332665)
chr1 (734-819)||(51672512-51672596)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 544 - 1100
Target Start/End: Complemental strand, 12024527 - 12023982
Alignment:
Q  544 gatccctaaaagtgtctttatgtagcacgataatccttgaattatagaaacatattcaagcgtgtattttgtaagtaaattcagagattaaactgactaa 643  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12024527 gatccttaaaagtgtctttatgtagcacgataatccttgaattatagaaacatattcaagcgtgtattttgtaagtaaattcagagattaaactgactaa 12024428  T
Q  644 ccaaaaacacgtggagggtcaaactagctaactaatgaaagacaatcaatgcttgttttgaaattttgatacattcggttagtgcacaattcactttaga 743  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||    
T  12024427 ccgaaaacacgaggagggtcaaactagctaactaatgaaagacaatcaatgcttgttttgaaattttgataca---------------------tttaga 12024349  T
Q  744 gtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagataatccaggtacattataacaaatcatgatttcgttnnnnnnncaaccctttc 843  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||        | || ||||    
T  12024348 gtgtaaagtgagtaatatctaccattgattaccaaaataaaggtagataatcccggtacattataacaaatcatgatttcgttaaaaaaaaacccttttc 12024249  T
Q  844 ttctcagttagaggatccaaatcccaaagactattgtgacaacgcttgacacatcaccagacaaaatataacgtttactctgttatttattatcaatgtt 943  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12024248 ttctcagttagaggatccaaatcccaaagactattgtgacaatgcttgacacatcaccagacaaaatataacgtttactctgttatttattatcgatgtt 12024149  T
Q  944 ttctacatg-ttagatttgggttgagtgctgctgagtccgt-agtaactgagtgatgcttttcatgggcgtttg-tttacataatcttg-gga-gatg-- 1036  Q
    ||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||      
T  12024148 ttctacatgtttagattttggttgagtgctgctgagtccataagtaactgagtgatgcttttcatggccgtttgttttacataatcttgtggatgatgtc 12024049  T
Q  1037 cattagtcat-gaaatcttttggtaaggttgttgtccttaaggatcc-tggaatca-tgtttgtttt 1100  Q
     ||||||||| ||||||||||| |||||||||||| ||| ||||||| |||||||| ||||||||||    
T  12024048 aattagtcatggaaatcttttgttaaggttgttgttctttaggatccttggaatcattgtttgtttt 12023982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 8e-95
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 12025076 - 12024884
Alignment:
Q  8 tcagctaccaaactcgttcgatcgcggcgtttctccaccgcgattcccggtccttgcattgttcacaaacgtggtgctgatatcctccacgatccttggt 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12025076 tcagctaccaaactcgtccgatcgcggcgtttctccaccgcgattcccggtccttgcattgttcacaaacgtggtgctgatatcctccacgatccttggt 12024977  T
Q  108 tcaacaaggtaactctctttctatctctaagaattttgaatttagtttgattttgcagaaacgaagtgaatattgtttagtttctgtaattcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  12024976 tcaacaaggtaactctctttctatctctaagaattttgaatttagtttgattttgcagaaacgaattggatattgtttagtttctttaattcc 12024884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 297 - 474
Target Start/End: Complemental strand, 12024793 - 12024613
Alignment:
Q  297 tgcgaagaatataagcgaccgttgaatcagtttaattatagtgtaaattactgttttgactaatatgtttctttatctgaccaagattactgttaattga 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  12024793 tgcgaagaatataagagaccgttgaatcagtttaattatagtgtaaattactgttttgaccaatatgtttctttatatgaccaagattactgttaattga 12024694  T
Q  397 tgtgcttatt---attttcatgtgaaaaatgaaagctaactttttatttattttctgaccaaattattgaggaaaaactga 474  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12024693 tgtgcttattctgattttcatatgaaaaatgaaagctaactttttatttattttctgaccaaattattgaggaaaaactga 12024613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 730 - 819
Target Start/End: Complemental strand, 39421655 - 39421566
Alignment:
Q  730 caattcactttagagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagataatccaggtacattataacaaatcatga 819  Q
    |||| ||||||| ||| |||| ||||||||||| |||||| |||| ||||  ||||||||||| |  | |||||  ||||||||||||||    
T  39421655 caatccactttaaagtataaagtgagtaatatcaaccattgattaacaaatcaaaggtagatattagaagtacaccataacaaatcatga 39421566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 734 - 819
Target Start/End: Complemental strand, 38603145 - 38603060
Alignment:
Q  734 tcactttagagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagataatccaggtacattataacaaatcatga 819  Q
    ||||||||||||||||| ||| ||||||| ||| |||||||  |||  ||||||||||| |  |||||||||||||||||||||||    
T  38603145 tcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacattataacaaatcatga 38603060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 734 - 819
Target Start/End: Original strand, 37757445 - 37757530
Alignment:
Q  734 tcactttagagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagataatccaggtacattataacaaatcatga 819  Q
    ||||||||||||||||| ||| ||||||| | | |||||||  |||  ||||||||||| |  |||||||||||||||| ||||||    
T  37757445 tcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatga 37757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 734 - 819
Target Start/End: Original strand, 37763193 - 37763278
Alignment:
Q  734 tcactttagagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagataatccaggtacattataacaaatcatga 819  Q
    ||||||||||||||||| ||| ||||||| | | |||||||  |||  ||||||||||| |  |||||||||||||||| ||||||    
T  37763193 tcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatga 37763278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 734 - 774
Target Start/End: Original strand, 25584016 - 25584056
Alignment:
Q  734 tcactttagagtgtaaaatgagtaatatctaccattaatta 774  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  25584016 tcactttagagtgtaaagtgagtaatatcaaccattaatta 25584056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 729 - 762
Target Start/End: Original strand, 7655100 - 7655133
Alignment:
Q  729 acaattcactttagagtgtaaaatgagtaatatc 762  Q
    ||||||||||||||||||||||||||||| ||||    
T  7655100 acaattcactttagagtgtaaaatgagtagtatc 7655133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 28872105 - 28872154
Alignment:
Q  68 gttcacaaacgtggtgctgatatcctccacgatccttggttcaacaaggt 117  Q
    ||||| ||||||||||||||||| || || |||||||||||||| |||||    
T  28872105 gttcataaacgtggtgctgatattcttcatgatccttggttcaataaggt 28872154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 731 - 779
Target Start/End: Original strand, 9521838 - 9521886
Alignment:
Q  731 aattcactttagagtgtaaaatgagtaatatctaccattaattaccaaa 779  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  9521838 aattcactttagagtgtaaagtgagtaatatcaaccattaattaacaaa 9521886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 742 - 792
Target Start/End: Original strand, 48741408 - 48741458
Alignment:
Q  742 gagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagata 792  Q
    ||||||||||||| | ||||| ||||||||||| |||| ||||||||||||    
T  48741408 gagtgtaaaatgactgatatcaaccattaattaacaaattaaaggtagata 48741458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 731 - 792
Target Start/End: Original strand, 50332604 - 50332665
Alignment:
Q  731 aattcactttagagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagata 792  Q
    ||||||||||||| |||||| | ||||||||  ||||||||||| ||||  |||||||||||    
T  50332604 aattcactttagaatgtaaagttagtaatattgaccattaattaacaaatcaaaggtagata 50332665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 819
Target Start/End: Complemental strand, 51672596 - 51672512
Alignment:
Q  734 tcactttagagtgtaaaatgagtaatatctaccattaattaccaaaataaaggtagataatccaggtacattataacaaatcatga 819  Q
    ||||||||||||||||| ||   |||||| ||| ||||||| |||| |||| ||||||| | ||| ||||| ||||||||||||||    
T  51672596 tcactttagagtgtaaagtggacaatatcaaccgttaattaacaaattaaa-gtagatattgcagatacatcataacaaatcatga 51672512  T

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