View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031-Insertion-2 (Length: 1100)
Name: NF5031-Insertion-2
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031-Insertion-2 |
 | |
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| [»] scaffold1175 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Original strand, 35136984 - 35137494
Alignment:
| Q |
7 |
accctcgccaccacaaagagtataaccattcaatttcaaactcacctaccttggttaatttatccacaaccatccc-tagttggattgaataagatcatg |
105 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35136984 |
accctcgccaccacaaagagtataaccatccaatttcaaactcacctaccttggttaatttatccacaaccatcccatagttggattgaataagatcatg |
35137083 |
T |
|
| Q |
106 |
ccaaatagaatttaactctgtaacacacctccataatattttaaatcaagaaataaaattacaacattaaataagttactttttgtactcatacatccat |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35137084 |
ccaaatagaatttaactctgtaacacacctccataatattttaaatcaagaaataaaattacaacattaaacaagttactttttgtactcatacatccat |
35137183 |
T |
|
| Q |
206 |
gttgtgtctcacatcatgcactatcctgctcaattgtttgaacatgttttttcccattcaaataaatagcatagtctactcattcaataggtgcgaacct |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35137184 |
gttgtgtctcacatcatgcactatcctgctcaattgtttgaacatgttttttcccattcaaataaatagcatagtctactcattcaataggtgcgaacct |
35137283 |
T |
|
| Q |
306 |
attatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttgagttttctgattccattgagaaagttgaattctacatatgcttgggca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35137284 |
attatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttgagttttctgattccattgagaaagttgaattctacatatgcttgggca |
35137383 |
T |
|
| Q |
406 |
tgtttcattgatttactcaatgaatactccttgtagaagttgcatctggaaaaccccataaccaaaatgtctgacaacaaaaattgtaaattttcaatag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35137384 |
tgtttcattgatttactcaatgaatactccttgtagaagttgcatctggaaaaccccataaccaaaatgtctgacaacaaaaattgtaaattttcaatag |
35137483 |
T |
|
| Q |
506 |
ccttgcatttc |
516 |
Q |
| |
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||||||||||| |
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| T |
35137484 |
ccttgcatttc |
35137494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 516
Target Start/End: Original strand, 35129839 - 35130278
Alignment:
| Q |
74 |
aaccatccc-tagttggattgaataagatcatgccaaatagaatttaactctgtaacacacctccataatattttaaatcaagaaataaaattacaacat |
172 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||||| |||| |||||| | |||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
35129839 |
aaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcagcacaactccataatattgtaaataaagaaataaaattacaacat |
35129938 |
T |
|
| Q |
173 |
taaataagttactttttgtactcatacatccatgttgtgtctcacatcat---gcactatcctgctcaattgtttgaacatgttttttcccattcaaata |
269 |
Q |
| |
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|||| ||||||| ||| ||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||| | |
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| T |
35129939 |
taaacaagttacatttg----tcatacatccatgttgtgtctcacatcatcatgcacaactctgctgaattgtttgaacatgttttttcccat------a |
35130028 |
T |
|
| Q |
270 |
aatagcatagt---ctactcattcaataggtgcgaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctgctcgttgagttttctg |
366 |
Q |
| |
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||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
35130029 |
aatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaatgacgttgttccacttttcaatctcctcctcgtcaagttttctg |
35130128 |
T |
|
| Q |
367 |
attccattgagaaagttgaattctacatatgcttgggcatgtttcattgatttactcaatgaatactccttgtagaagttgcatctggaaaaccccataa |
466 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||| || ||| |||||||||||||||||||| | |
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| T |
35130129 |
attccattgagaaagttgaattctctatatgcttctgcatgtttcgttgatttactcaatgaatattccaagtggaaattgcatctggaaaaccccatga |
35130228 |
T |
|
| Q |
467 |
ccaaaatgtctgacaacaaaaattgtaaattttcaatagccttgcatttc |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35130229 |
ccaaaatgtctgacaacaaaaattgtaaattttcaatagctttgcatttc |
35130278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 554 - 674
Target Start/End: Original strand, 35137723 - 35137843
Alignment:
| Q |
554 |
tagttagatatctattaatgaaacattaccactatctttgcatgagcaatgattaacatcctggtcacatgactccaaatggcaaactacagcatgcgcc |
653 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35137723 |
tagttagatatctatttatgaaacattaccattatctttgcatgagcaatgattaacatcctggtcacatgactccaaatggcaaactacagcatgcgcc |
35137822 |
T |
|
| Q |
654 |
caatctatatataactcattc |
674 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35137823 |
caatctatatataactcattc |
35137843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 35130314 - 35130419
Alignment:
| Q |
554 |
tagttagatatctattaatgaaacattaccactatctttgcatgagcaatgattaacatcctggtcacatgactccaaatggcaaactacagcatgcgcc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130314 |
tagttagatatctattaatgaaacattaccactatctttgcatgagcaatggttgacatcctggtcacatgactccaaatggcaaactacagcatgcgcc |
35130413 |
T |
|
| Q |
654 |
caatct |
659 |
Q |
| |
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|||||| |
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| T |
35130414 |
caatct |
35130419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 741 - 1067
Target Start/End: Original strand, 35137910 - 35138220
Alignment:
| Q |
741 |
gaatattattttagaaattacttcatcaataacatttagtttattaagaattgcttatattttagacca---ttaaatatgnnnnnnnnnnnnnnattaa |
837 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
35137910 |
gaatattattttagaaattacttcatcaataacatttagtttattaagaattgcttatattttagaccattattaaatatgtttttttttttta-atta- |
35138007 |
T |
|
| Q |
838 |
caatgaaaattggaaaagaggttaaatatttgaataaaagtggattctttggttaccataaaggaggaaatgctttcccttcttctagtttgaatcctcg |
937 |
Q |
| |
|
|||||||| ||||| ||||| |||| ||| ||||||||||| ||||| ||||||||||| ||| |||||||||| ||| ||||||||||||| ||| |
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| T |
35138008 |
caatgaaa-ttggataagagt----atatatga-taaaagtggat-ctttg-ttaccataaag-agggaatgctttcc-ttcctctagtttgaatc-tcg |
35138096 |
T |
|
| Q |
938 |
atattaatcctcctgggtttcaaattatatcaagatcgtattactccataatatcacactaagtaagtctttgggggtggcatcctcaacatattccaag |
1037 |
Q |
| |
|
|||| |||| |||||| ||||||||||| ||| |||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
35138097 |
atat-aatc-tcctgg-tttcaaattat-tca-gatcgttatactc-ataataatccactaagtaagtctttggtggtggcatcctcaacatattccagg |
35138190 |
T |
|
| Q |
1038 |
gaatatctctctccatcactcgccttctgc |
1067 |
Q |
| |
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||||||||||||| |||||||||||||||| |
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|
| T |
35138191 |
gaatatctctctcaatcactcgccttctgc |
35138220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 994 - 1067
Target Start/End: Original strand, 35130868 - 35130941
Alignment:
| Q |
994 |
cactaagtaagtctttgggggtggcatcctcaacatattccaaggaatatctctctccatcactcgccttctgc |
1067 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||| ||| | |||||||||||| |||| |||| |||||| |
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|
| T |
35130868 |
cactaaataagtctttggcggtggcattctcaacatatcccaggaaatatctctctcaatcaatcgctttctgc |
35130941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 575 - 665
Target Start/End: Original strand, 14276982 - 14277072
Alignment:
| Q |
575 |
aacattaccactatctttgcatgagcaatgattaacatcctggtcacatgactccaaatggcaaactacagcatgcgcccaatctatatat |
665 |
Q |
| |
|
|||||||||||| | || ||||||||||| ||| ||||||| || |||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
14276982 |
aacattaccacttttttggcatgagcaattattcacatcctcgtaacatgactccaaatggaaaactatcccatgcgcccaatctatatat |
14277072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 14276565 - 14276617
Alignment:
| Q |
136 |
ccataatattttaaatcaagaaataaaattacaacattaaataagttactttt |
188 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
14276565 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagttgctttt |
14276617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 387 - 335
Alignment:
| Q |
136 |
ccataatattttaaatcaagaaataaaattacaacattaaataagttactttt |
188 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| |
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|
| T |
387 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtttctttt |
335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 206 - 109
Alignment:
| Q |
330 |
gttccacttttcaatctcctgctcgttgagt---tttctgattccattgagaaagttgaattctacatatgcttgggcatgtttcattgatttactca |
424 |
Q |
| |
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|||||||||| ||||||||| ||| || ||| ||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||| |
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|
| T |
206 |
gttccactttacaatctcctcctcattaagtgattttctgattcctttgagaaagttgaattctctatatgcatttctgtgtttcattgatttactca |
109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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