View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5031-Insertion-3 (Length: 821)

Name: NF5031-Insertion-3
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5031-Insertion-3
NF5031-Insertion-3
[»] chr6 (1 HSPs)
chr6 (8-821)||(29837402-29838209)
[»] chr1 (3 HSPs)
chr1 (361-595)||(34628690-34628921)
chr1 (197-288)||(34628535-34628626)
chr1 (13-51)||(34628413-34628451)


Alignment Details
Target: chr6 (Bit Score: 731; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 8 - 821
Target Start/End: Complemental strand, 29838209 - 29837402
Alignment:
Q  8 cttggttcatccaaacaaactgtactttgtattgtaaatgacttcctacaccataaagataagtaataataatcagtactttgtcttacagagagcatac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29838209 cttggttcatccaaacaaactgtactttgtattgtaaatgacttcctacaccataaagataagtaataataatcagtattttgtcttacagagagcatac 29838110  T
Q  108 atcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatataccgtcttta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29838109 atcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatttaccgtcttta 29838010  T
Q  208 actaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcaaacgacacagatgcatca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  29838009 actaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcacacgacaccgatgcatca 29837910  T
Q  308 ataaattacaacacaacttatatatcatagaataattttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattgta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29837909 ataaattacaacacaacttatatatcatagaataattttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattgta 29837810  T
Q  408 ggtccttcttggctagccattacaactatacgcgttctaagagcagatagccgttcaattatattcttcgacaaataatcaccaagtgatgattgtgaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  29837809 ggtccttcttggctagccattacaactatacgcgttctaagagcagatatccgttcgattatattcttcgacaaataatcaccaagtgatgattgagaaa 29837710  T
Q  508 aatcaacaggtttcgggattcttaaaccaggaacatatactgaaacctctccaatactccccggcctccttcgatttccaccagaatccttcggagttga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29837709 aatcaacaggtttcgggattcttaaaccaggaacatatactgaaacctctccaatactccccggcctccttcgatttccaccagaatcctttggagttga 29837610  T
Q  608 tcctatacatccccatctctgaaggtttactatacctgctgaaatgctgatacaaacaagttacaataaatcaacctaagaaatctctatgatttcatag 707  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  29837609 tcctatacat-cccatctctgaaggtttattatacctgctg-aatgctgatacaaacaagttacaataaatcaacctaag-aatctctatga-ttcatag 29837514  T
Q  708 aaatgttgattcattttattgaagtattatgatattgaaaaccacttacaaggaagctaagagattaacacactaaaaagtcacaaacaagactaattaa 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  29837513 aaatgttgattcattttattgaagtattatgatattgaaaaccacttacaaggaagctaagagatta--acactaaaaagtcactaacaagactaattaa 29837416  T
Q  808 atgccaagttgcca 821  Q
    ||||||||||||||    
T  29837415 atgccaagttgcca 29837402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 9e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 361 - 595
Target Start/End: Original strand, 34628690 - 34628921
Alignment:
Q  361 actaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttggctagccattacaactatacgcgttctaagagcagatagccg 460  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| ||||||||||||||||  ||    
T  34628690 actaaccatgttgagttgcactttttctttttgttcttgtaattgtaggaccttcttgaccagccattacaacgatacgagttctaagagcagataagcg 34628789  T
Q  461 ttcaattatattcttcgacaaataatcaccaagtgatgattgtgaaaaatcaacaggtttcgggattcttaaaccaggaacatatactgaaacctctcca 560  Q
    ||| | |||  |||| |||||| ||||||||||    || || | ||||||||| ||||| || ||||||||||| |||||||| || ||||| ||||||    
T  34628790 ttccactatgctctttgacaaagaatcaccaag---cgactgcgtaaaatcaaccggtttaggaattcttaaaccgggaacatagacagaaacatctcca 34628886  T
Q  561 atactccccggcctccttcgatttccaccagaatc 595  Q
    ||||||||||||||||||| |||||||||||||||    
T  34628887 atactccccggcctccttctatttccaccagaatc 34628921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 34628535 - 34628626
Alignment:
Q  197 taccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatc 288  Q
    |||| ||||| |||||||| | ||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||||| |||||||||    
T  34628535 taccatctttgactaatcccaaaagtaccggtaagtagtcttcaagagcctgtagaagatcagccagtgttgaacctcctgaggatgaaatc 34628626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 34628413 - 34628451
Alignment:
Q  13 ttcatccaaacaaactgtactttgtattgtaaatgactt 51  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34628413 ttcatccaaacaaattgtactttgtattgtaaatgactt 34628451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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