View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031-Insertion-4 (Length: 673)
Name: NF5031-Insertion-4
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 395 - 647
Target Start/End: Original strand, 18664444 - 18664696
Alignment:
| Q |
395 |
gctctacctacgaagatactttgccgcttaagtcagtatgtgttatggatctgaggtaatttagggtaaaatgtatgcaaacctacaccaatgcccttga |
494 |
Q |
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| T |
18664444 |
gctctacctacgaagatactttgtcgcttaagtcagtatgtgttatggatctgaggtaatttagagtaaaatgtatgcaaacctagaccagtgcccttga |
18664543 |
T |
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| Q |
495 |
gttgatatttataaagtaggcttaggatttttgtccttaaaccttaacctggtcagttgtcctctagagacagttgtaagcaaattatgagaagacatca |
594 |
Q |
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| T |
18664544 |
gttggtatttataaagtaggcttaggatttttgtccttgaaccttaacgtggtcagttgtcctctagggacagttgtaagcagattatgagaagacatca |
18664643 |
T |
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| Q |
595 |
ttgggggccaaattccctctccgactccctatatcctttctccaagcattatg |
647 |
Q |
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| T |
18664644 |
ttgggacccaaattccctctccgactcccaataccctttctccaagcattatg |
18664696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 170 - 399
Target Start/End: Original strand, 18650119 - 18650351
Alignment:
| Q |
170 |
cacaaattaacaataagtgttgttttgatttcagtatgtttttgttaatttttgttggt---ggtggtggatctgtatggattgggtttggtctatcttg |
266 |
Q |
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| T |
18650119 |
cacaaattaacaataagtgttgttttgctttcagtttgtttttgttaatttttgttggtggtggtggtggatgtgtatggattgggtttggtctatcttg |
18650218 |
T |
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| Q |
267 |
tctatttactcttttcttatcagataattagtgtttggtttggccaacctaccatataacaaaattaccgaggcctcaaaaaagtggaggctaaactcca |
366 |
Q |
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| T |
18650219 |
tttatttactctttttttatcagataataagtgtttcgtttggccaacctaccatataacaaaattatcgaggcctcaaaaaagtggaggctaaactcca |
18650318 |
T |
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| Q |
367 |
tagagctgagtgttcttgtcaatgatcagctct |
399 |
Q |
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| T |
18650319 |
tagagctgaatgttcttgtcaatgatcggctct |
18650351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 18649989 - 18650058
Alignment:
| Q |
38 |
aggggatggtacctgcagattatctcaatcaaatacaaggccatgctctaataataaaaatggaccctta |
107 |
Q |
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| T |
18649989 |
aggggatggtacctgcaaattttctcaatcaaatacaaggccatgctctaataataaaaatggaccctta |
18650058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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