View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5031-Insertion-5 (Length: 556)

Name: NF5031-Insertion-5
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5031-Insertion-5
NF5031-Insertion-5
[»] chr4 (25 HSPs)
chr4 (7-352)||(9138027-9138352)
chr4 (350-556)||(9138407-9138613)
chr4 (90-352)||(8040907-8041168)
chr4 (364-556)||(8041237-8041429)
chr4 (364-556)||(8416771-8416963)
chr4 (350-556)||(8035809-8036015)
chr4 (361-556)||(8411169-8411364)
chr4 (364-556)||(8358987-8359179)
chr4 (127-352)||(8417041-8417255)
chr4 (185-352)||(8418866-8419022)
chr4 (364-556)||(8404121-8404316)
chr4 (88-178)||(8035542-8035632)
chr4 (94-324)||(8404434-8404666)
chr4 (169-328)||(43144043-43144201)
chr4 (7-77)||(8040720-8040790)
chr4 (251-352)||(8035653-8035754)
chr4 (7-84)||(8417446-8417523)
chr4 (266-328)||(8411460-8411522)
chr4 (7-84)||(8035294-8035371)
chr4 (88-168)||(8411591-8411671)
chr4 (368-556)||(9576835-9577023)
chr4 (271-332)||(8358834-8358895)
chr4 (31-84)||(8411850-8411903)
chr4 (367-548)||(43144300-43144481)
chr4 (271-323)||(9576708-9576762)
[»] chr2 (4 HSPs)
chr2 (88-352)||(33084582-33084845)
chr2 (350-556)||(33084321-33084527)
chr2 (17-84)||(33085016-33085083)
chr2 (271-321)||(24845660-24845710)
[»] chr7 (2 HSPs)
chr7 (93-327)||(5476994-5477230)
chr7 (424-514)||(5476711-5476801)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 9138027 - 9138352
Alignment:
Q  7 aggttgcactttcttcgaaatgggatttaagaggaattcctgcacaacttgaatgaataggagacattattgaatggacattattagaggaccaagttga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  9138027 aggttgcactttcttcgaaatgggatttaagaggaattcctgcaaacctcgaatgaataagagacattattaaatggacattattagaggacaaagttga 9138126  T
Q  107 taagcaaatgacaagttcaaatatgtttttgtaatacattcaaagactactaacactgactaacatattcaaggacccaaatgattgtgtaatcaaaata 206  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||               
T  9138127 taagcaaatgacaagttcagatatgtttttgtaatacattcaaagactactaacaccgaccaacatattcaaggaccaaaatgattgtg----------- 9138215  T
Q  207 tacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagcca 306  Q
            |||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||| || ||||||||||||    
T  9138216 --------aaagtacact-aaagtgacttacattttgtattttctcaaagacagcataaccaaattccaaaatcttgacattggcaagcacttgcagcca 9138306  T
Q  307 tcttaagaagattgaagcttccccgttattggaaaagccatacata 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9138307 tcttaagaagattgaagcttccccgttattggaaaagccatacata 9138352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 350 - 556
Target Start/End: Original strand, 9138407 - 9138613
Alignment:
Q  350 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgat 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  9138407 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacttttcttatagtcaaattggatagtgtctgat 9138506  T
Q  450 tagatatgcagaggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgatt 549  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  9138507 tagatatgcagaggacttgtgcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacagtgatc 9138606  T
Q  550 gtgagtt 556  Q
    |||||||    
T  9138607 gtgagtt 9138613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 90 - 352
Target Start/End: Original strand, 8040907 - 8041168
Alignment:
Q  90 ttagaggaccaagttgataagcaaatgacaagttcaaatatgtttttgtaatacattcaaagactactaacactgactaacatattcaaggacccaaatg 189  Q
    |||||||  |||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  8040907 ttagaggctcaagttgataagaaaatgacaaattcggatatgtttttgtaatacattcaaagactacttacacggattaacatattcaaggacccaaatg 8041006  T
Q  190 attgtgtaatcaaaatatacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttgacattg 289  Q
     |||||||||||||||||| |||| ||||||||| || |||||| ||| |||| |||| | ||||||| || |||  ||||| |||||||||| ||||||    
T  8041007 tttgtgtaatcaaaatatagatgtgaaagtacac-aacagtcacctaccttttgtattgtttcaatgacagaatagtcaaatctcaaaatctttacattg 8041105  T
Q  290 gaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 352  Q
    |  | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8041106 gccagcacttgcagccatcttaagaagattgaagcttccacgttattggaaatgccatacata 8041168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 364 - 556
Target Start/End: Original strand, 8041237 - 8041429
Alignment:
Q  364 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagagg 463  Q
    |||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| |   |||||||||||||||| | ||||||||||||||||||||||    
T  8041237 gatagtaaaagaactaagatttggagtagaaagcgaaaattggacagctgatacataggttatagtcaaattggataatgtctgattagatatgcagagg 8041336  T
Q  464 acttgggcatcctcaatcaaagaacaagcaat-gagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgattgtgagtt 556  Q
    ||||| ||||||||||||||||||| ||| || |||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  8041337 acttgtgcatcctcaatcaaagaac-agctatcgagaaccaaaatattcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagtt 8041429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 364 - 556
Target Start/End: Complemental strand, 8416963 - 8416771
Alignment:
Q  364 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagagg 463  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    ||||||||||||||| | ||||||||||||||||||||||    
T  8416963 gatagtaaaagaactaagatttggagtagaaagcgaaaattggtcagctgatacgtaggatatagtcaaattggataatgtctgattagatatgcagagg 8416864  T
Q  464 acttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgattgtgagtt 556  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||| |||  ||||||||| |||||| |||||||| |||| |||||||    
T  8416863 acttgtgcatcctcaatcaaagaacaaccactgataaccaaagtattcagcacatgacagtttgaaaagggctcagcacaatgatcgtgagtt 8416771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 350 - 556
Target Start/End: Original strand, 8035809 - 8036015
Alignment:
Q  350 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgat 449  Q
    ||||||||||   |||||||||||||||||||  |||||| |||||| |||||||| ||||||  |||   |  ||||||||||||||| ||||||||||    
T  8035809 ataggacaatgcccgatagtaaaagaactaagccttggagtagaaagcgaatattgttcagctagtacagatgatatagtcaaattggatagtgtctgat 8035908  T
Q  450 tagatatgcagaggacttgggcatcctcaatcaaagaacaagcaat-gagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgat 548  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| ||||||||||  |||||||| |||||||||||||||| ||||    
T  8035909 tagatatgcagaggacttgtgcatcctcaatcaaagaac-agctatcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcacaatgat 8036007  T
Q  549 tgtgagtt 556  Q
    ||||||||    
T  8036008 tgtgagtt 8036015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 361 - 556
Target Start/End: Complemental strand, 8411364 - 8411169
Alignment:
Q  361 atcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcag 460  Q
    ||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| |||| || |||||||||||| |||| | |||||||||||||||||||    
T  8411364 atcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggataatgtctgattagatatgcag 8411265  T
Q  461 aggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgattgtgagtt 556  Q
    |||||||| ||||| |||||||||||||||    |||| |||||||| |||| |||  |||| |||||||| ||||||||||| ||||||||||||    
T  8411264 aggacttgtgcatcttcaatcaaagaacaatacctgagcaccaaagtcttcagcacatgacattttggaaaagggtcagcacaatgattgtgagtt 8411169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 556
Target Start/End: Original strand, 8358987 - 8359179
Alignment:
Q  364 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagagg 463  Q
    |||||||||| ||||||||||||||| |||||| ||| ||||||||||| ||||||    ||||||||||||||| | ||||||||||||||||||||||    
T  8358987 gatagtaaaaaaactaagatttggagtagaaagcgaaaattggtcagctaatacgtaggatatagtcaaattggataatgtctgattagatatgcagagg 8359086  T
Q  464 acttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgattgtgagtt 556  Q
    | ||| ||||| |||||||||||||||    ||||   |||||| ||||||||  ||||||||| |||||||||||||||||||| |||||||    
T  8359087 atttgtgcatcatcaatcaaagaacaatacttgagctgcaaagtgttcaacacatgacagtttgaaaaggggtcagcacagtgatagtgagtt 8359179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 127 - 352
Target Start/End: Complemental strand, 8417255 - 8417041
Alignment:
Q  127 atatgtttttgtaatacattcaaagactactaacactgactaacatattcaaggacccaaatgattgtgtaatcaaaatatacatgtcaaagtacactaa 226  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||||||| |||           | |    
T  8417255 atatgtttttgtaatacattcaaagactacttacaccgattaacatattcaaggacctaaatgattgtgtaaccaaaatatatatg-----------tga 8417167  T
Q  227 aagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagctt 326  Q
    || ||||||||||| | |||  | ||||  | |||| | |||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  8417166 aattcacttacattgtgtatcgtttcaagaacagcagagccaactttcaaaatctttacattggcaaacacttgcagccatcttaagaagattgaagctt 8417067  T
Q  327 ccccgttattggaaaagccatacata 352  Q
    ||||| || || || |||||| ||||    
T  8417066 ccccgatagtgaaatagccatccata 8417041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 185 - 352
Target Start/End: Complemental strand, 8419022 - 8418866
Alignment:
Q  185 aaatgattgtgtaatcaaaatatacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttga 284  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | | ||||||| |||||||||||| ||||||||| |    
T  8419022 aaatgattgtgtaatcaaaatatatatgtgaaagtacactaaa-gtcacttacattttttattgtttgaatgataccataaccaaattccaaaatcttta 8418924  T
Q  285 cattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 352  Q
    | |||          |||||||| ||| |||||||||||||||||| ||||||| | |||||||||||    
T  8418923 cgttg----------gcagccattttacgaagattgaagcttcccctttattgggacagccatacata 8418866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 364 - 556
Target Start/End: Complemental strand, 8404316 - 8404121
Alignment:
Q  364 gatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgat---acgtttcttatagtcaaattggacagtgtctgattagatatgcag 460  Q
    |||||||||||||||||||||||||| |||||| ||| |||  |||||||||   | ||    |||||||||| ||||||||||||||||||||||||||    
T  8404316 gatagtaaaagaactaagatttggagtagaaagcgaaaattcatcagctgatgatatgtgaaatatagtcaaactggacagtgtctgattagatatgcag 8404217  T
Q  461 aggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgattgtgagtt 556  Q
    |||||||| |||||||||||||||  ||||    |||| ||||||||||||||| |  ||  ||||| |||||| ||| || |||||| |||||||    
T  8404216 aggacttgtgcatcctcaatcaaatcacaaaacctgagcaccaaagtattcaacgcatgaaggtttgaaaagggatcaacatagtgatcgtgagtt 8404121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 8035542 - 8035632
Alignment:
Q  88 tattagaggaccaagttgataagcaaatgacaagttcaaatatgtttttgtaatacattcaaagactactaacactgactaacatattcaa 178  Q
    |||||||||||| ||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  8035542 tattagaggacctagtggataagaaaatgacaagttcagatatgttttcgtaatacattcaaagactactaacaccaactaacatattcaa 8035632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 94 - 324
Target Start/End: Complemental strand, 8404666 - 8404434
Alignment:
Q  94 aggaccaagttgataagcaaatgacaagttcaaatatgtttttgtaatacattcaaagacta--ctaacactgactaacatattcaaggacccaaatgat 191  Q
    |||||||||||||| |||||||||||  |||| | |||||||||||||||||||||||||||  || |||  | |||||||||| ||||||||| |||||    
T  8404666 aggaccaagttgattagcaaatgacagattcataaatgtttttgtaatacattcaaagactacgctgacatcgtctaacatatttaaggacccagatgat 8404567  T
Q  192 tgtgt-aatcaaaatatacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttgacattgg 290  Q
    ||| | |||||||||| | | || |||||| ||| ||||| ||||||||  | ||||   | ||||| ||  ||||||| |||||||||||| || ||||    
T  8404566 tgtttaaatcaaaataaagaagtgaaagtatact-aaagtgacttacatagtctattgcttgaatgacagagtaaccaattttcaaaatctttacgttgg 8404468  T
Q  291 aaatcacttgcagccatcttaagaagattgaagc 324  Q
     || |||||| ||||| |||||||||| ||||||    
T  8404467 caagcacttgaagccaacttaagaagactgaagc 8404434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 328
Target Start/End: Original strand, 43144043 - 43144201
Alignment:
Q  169 acatattcaaggacccaaatgattgtgtaatcaaaatatacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataacca 268  Q
    ||||| |||| ||||||||| ||||| ||||||||||| | | || |||||| | |||| || ||||||||||| |||| | | ||||| || |||||||    
T  43144043 acatactcaaagacccaaataattgtataatcaaaataaagaggtgaaagtatattaaa-gtaacttacattttgtattgtttgaatgagagaataacca 43144141  T
Q  269 aatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttcc 328  Q
    | |||||||||||| || |||| || |||||||||||||||||||||| |||||||||||    
T  43144142 attttcaaaatctttacgttggcaagcacttgcagccatcttaagaaggttgaagcttcc 43144201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 8040720 - 8040790
Alignment:
Q  7 aggttgcactttcttcgaaatgggatttaagaggaattcctgcacaacttgaatgaataggagacattatt 77  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  8040720 aggttgcgctttcttcgaaattggatttaagcggaattcctgcacaattcgaatgaataggagacattatt 8040790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 8035653 - 8035754
Alignment:
Q  251 tcaatgatagcataaccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccataca 350  Q
    ||||||| || ||| ||||||||||||||||| ||||||| || ||||||||||||  ||||||||||  |||||||| | |||||||||||| ||||||    
T  8035653 tcaatgacagaatagccaaatttcaaaatctttacattggcaagcacttgcagccaatttaagaagatcaaagcttccgcattattggaaaagtcataca 8035752  T
Q  351 ta 352  Q
    ||    
T  8035753 ta 8035754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 8417523 - 8417446
Alignment:
Q  7 aggttgcactttcttcgaaatgggatttaagaggaattcctgcacaacttgaatgaataggagacattattgaatgga 84  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||| ||||||    
T  8417523 aggttgcgctttcttcgaaatgggatttaagcggaattcctgcacaattcaaatgaatagcagacattattaaatgga 8417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 8411522 - 8411460
Alignment:
Q  266 ccaaatttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttcc 328  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||    
T  8411522 ccaaatttcaaaatctttacattggcaagcacttgcagccatcttacgaagattgaagcttcc 8411460  T

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Target: chr4; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 8035294 - 8035371
Alignment:
Q  7 aggttgcactttcttcgaaatgggatttaagaggaattcctgcacaacttgaatgaataggagacattattgaatgga 84  Q
    ||||||||  ||||||||| | ||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||    
T  8035294 aggttgcaaattcttcgaagttggatttaagaggaatacctgcacaattcgaatgaataggagacattattaaatgga 8035371  T

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Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 8411671 - 8411591
Alignment:
Q  88 tattagaggaccaagttgataagcaaatgacaagttcaaatatgtttttgtaatacattcaaagactactaacactgacta 168  Q
    |||||||||| |||||||||| ||||||||||| | || ||||||||||||| ||||||||||||| ||| |||| |||||    
T  8411671 tattagaggatcaagttgatacgcaaatgacaaatgcatatatgtttttgtagtacattcaaagaccactgacaccgacta 8411591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 556
Target Start/End: Original strand, 9576835 - 9577023
Alignment:
Q  368 gtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagaggactt 467  Q
    |||||| ||||||||||||||| |||||||||  || ||  || ||||| |    ||| ||||||||  || ||||| | ||||||||||||||||||||    
T  9576835 gtaaaataactaagatttggagtagaaagtgataatcggcaagatgatatgcaagttaaagtcaaatgtgaaagtgtataattagatatgcagaggactt 9576934  T
Q  468 gggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgattgtgagtt 556  Q
    | |  |||| ||||||| |||||  |  ||| ||||| |||||||||||| ||||||| | |||||| |||||||||||| ||| ||||    
T  9576935 gtgtttccttaatcaaacaacaataaccgagcaccaatgtattcaacacgagacagttcgaaaagggatcagcacagtgactgttagtt 9577023  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 8358834 - 8358895
Alignment:
Q  271 tttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattgaagcttccccgt 332  Q
    ||||||||||| |||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  8358834 tttcaaaatctcgacattggcaagcacttgcagccattttaagaagattgaagctttcccgt 8358895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 8411903 - 8411850
Alignment:
Q  31 atttaagaggaattcctgcacaacttgaatgaataggagacattattgaatgga 84  Q
    |||||||||||| |||||||||| |||||| ||||||| |||||||| ||||||    
T  8411903 atttaagaggaagtcctgcacaatttgaataaataggatacattattaaatgga 8411850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 548
Target Start/End: Original strand, 43144300 - 43144481
Alignment:
Q  367 agtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgattagatatgcagaggact 466  Q
    |||||||||  |||||||||||| |||||||||| |||| | |||||  ||      |||||| ||| |||| ||||  | |||||||||||| ||||||    
T  43144300 agtaaaagacttaagatttggagtagaaagtgaaaattgctgagctgcaacagaagatatagttaaactggaaagtgcattattagatatgcaaaggact 43144399  T
Q  467 tgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgat 548  Q
    |  ||||||| ||||||||||||| |  | || |||||| |||| ||| |  ||||||||| ||| ||||||||| ||||||    
T  43144400 tttgcatcctgaatcaaagaacaatccctaagtaccaaattatttaactcatgacagtttgaaaaagggtcagcatagtgat 43144481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 9576708 - 9576762
Alignment:
Q  271 tttcaaaatcttgacattggaaatcacttgcagcc--atcttaagaagattgaag 323  Q
    |||||||||||||||||||| || |||||||||||  ||| ||||||||||||||    
T  9576708 tttcaaaatcttgacattggcaagcacttgcagccatatcctaagaagattgaag 9576762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 88 - 352
Target Start/End: Complemental strand, 33084845 - 33084582
Alignment:
Q  88 tattagaggaccaagttgataagcaaatgacaagttcaaatatgtttttgtaatacattcaaagactactaacactgactaacatattcaaggacccaaa 187  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||    
T  33084845 tattagaggatcaagttgataagcaaatgacaatttcagatatgtttttgtaatacaatcgaagactactaacaccgactaacatattcaacgacccaaa 33084746  T
Q  188 tgattgtgtaatcaaaatatacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttgacat 287  Q
    ||||||||||||||||||||| |||  |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  33084745 tgattgtgtaatcaaaatatagatgcgaaagtacact-aaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacat 33084647  T
Q  288 tggaaatcacttgcagccatcttaagaagattgaagcttccccgttattggaaaagccatacata 352  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||    
T  33084646 tggaaagcacttgcagccatcttaggaagattgaagcttctccgtcattggaaaagccgtacata 33084582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 350 - 556
Target Start/End: Complemental strand, 33084527 - 33084321
Alignment:
Q  350 ataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacgtttcttatagtcaaattggacagtgtctgat 449  Q
    |||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||  | ||||||||||||||| ||||||||||    
T  33084527 ataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggatagtgtctgat 33084428  T
Q  450 tagatatgcagaggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgcgacagtttggaaaggggtcagcacagtgatt 549  Q
    |||| ||| |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  33084427 tagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgacagtttggaaaggggtcagcacaatgatt 33084328  T
Q  550 gtgagtt 556  Q
    |||||||    
T  33084327 gtgagtt 33084321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 33085083 - 33085016
Alignment:
Q  17 ttcttcgaaatgggatttaagaggaattcctgcacaacttgaatgaataggagacattattgaatgga 84  Q
    ||||||||| | ||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||    
T  33085083 ttcttcgaagttggatttaagaggaattcctgcacaattcgaatgaataagagacattattaaatgga 33085016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 24845710 - 24845660
Alignment:
Q  271 tttcaaaatcttgacattggaaatcacttgcagccatcttaagaagattga 321  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  24845710 tttcaaaatcttcacattggaaagcacttgcagccattttaagaagattga 24845660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 93 - 327
Target Start/End: Complemental strand, 5477230 - 5476994
Alignment:
Q  93 gaggaccaagttgataagcaaatgacaagttcaaatatgtttttgtaatacattcaaagact--actaacactgactaacatattcaaggacccaaatga 190  Q
    ||||||||||||||| |||||||||||  |||| | ||||||||||||||||||||||||||  |||  ||  | |||||||||| ||||||||||||||    
T  5477230 gaggaccaagttgattagcaaatgacagattcatagatgtttttgtaatacattcaaagactacacttgcatcgtctaacatatttaaggacccaaatga 5477131  T
Q  191 ttg-tgtaatcaaaatatacatgtcaaagtacactaaaagtcacttacattttttattttctcaatgatagcataaccaaatttcaaaatcttgacattg 289  Q
    ||| | ||||||||||| | | || |||||| ||| | ||| ||||||||| | ||||   | ||||||||  ||||||| |||||||||||| || ||     
T  5477130 ttgttttaatcaaaataaagaagtgaaagtatact-agagtgacttacattgtctattgcttgaatgatagagtaaccaattttcaaaatctttacgttc 5477032  T
Q  290 gaaatcacttgcagccatcttaagaagattgaagcttc 327  Q
    | || |||||| ||||| |||||||||| |||||||||    
T  5477031 gcaagcacttgaagccaacttaagaagactgaagcttc 5476994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 5476801 - 5476711
Alignment:
Q  424 tatagtcaaattggacagtgtctgattagatatgcagaggacttgggcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaac 514  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    |||| |||||||||||||||    
T  5476801 tatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaac 5476711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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