View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031-Insertion-6 (Length: 442)
Name: NF5031-Insertion-6
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 5361863 - 5361575
Alignment:
| Q |
8 |
caaagcagcatagtccaaaacaacaacattcaccccaaaaacaaggtacaatgaatgttagttaaaagcataaaacaaaacataaatttctaatacataa |
107 |
Q |
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| T |
5361863 |
caaagcagcatagtccaaaacaacaacattcaccccaaaaacaaggtacaatgaatgttagttaaaagcataaaacaaaacataaatttctaatatataa |
5361764 |
T |
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| Q |
108 |
caatgttgataaattgataccatttcgcacgtgcggcgagtttaagcggcattggttgagattcacaacaaggtccttccatagcaaccttatgaagtcc |
207 |
Q |
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| T |
5361763 |
caatgttgataaattgataccatttcgcacgtgcggcgagtttaagcggcattggttgagattcacaacaaggtccttccatagcaaccttatgaagtcc |
5361664 |
T |
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| Q |
208 |
atacagctccatctccaaatcaccatcacaattaccaatataccctttctcaccaacatattctgtagccgtcataaacatcttctcca |
296 |
Q |
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| T |
5361663 |
atacaactccatctccaaatcaccatcacaattaccaatataccctttctcaccaacatattctgtagccgtcataaacatcttctcca |
5361575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 362 - 442
Target Start/End: Complemental strand, 5361509 - 5361429
Alignment:
| Q |
362 |
gttaagctttcttccatgatttcttccacacaatcctcgttcctctgttccacagaatcatcaccttttgtaacagtttcc |
442 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5361509 |
gttaagctttcttccatgatttcttccacacactcctcgttcctctgttgcacagaatcatcaccttttgtaacagtttcc |
5361429 |
T |
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