View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5031_high_2 (Length: 398)
Name: NF5031_high_2
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 29838579 - 29838204
Alignment:
| Q |
1 |
acagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29838579 |
acagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttg |
29838480 |
T |
|
| Q |
101 |
tagtattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838479 |
tagtattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcatt |
29838380 |
T |
|
| Q |
201 |
gacatcaaatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838379 |
gacatcaaatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcat |
29838280 |
T |
|
| Q |
301 |
tcttctctataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838279 |
tcttctctataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggt |
29838204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 34628143 - 34628284
Alignment:
| Q |
118 |
taccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaac |
217 |
Q |
| |
|
|||| ||||||||| | |||||||||| || |||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |
|
|
| T |
34628143 |
taccttctgatacttttggctgatgaccatcggtggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagac |
34628242 |
T |
|
| Q |
218 |
cgacaacacctcataccaagcattagacatggttgtttcctg |
259 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
34628243 |
tgacaacacttcataccaagcattagacatggctgtttcctg |
34628284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University