View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031_high_4 (Length: 379)
Name: NF5031_high_4
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 7926611 - 7926702
Alignment:
| Q |
10 |
acatcatcaatcatcatccattcagtggtgaagctgtcacaaccacatgacatggttatgtttttcatcttccacgtggctccattgtgggc |
101 |
Q |
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| T |
7926611 |
acatcatcaatcatcatccattcagtggtgaagctgtcacaaccacatgacatggttatgtttttcatcttccacgtggctccattgtgggc |
7926702 |
T |
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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 7926847 - 7926928
Alignment:
| Q |
279 |
gtacataatttcttgatagagatggtgtttttaaagcttttaaacgtgcatttttcacaatattcatcatcgaccatcatta |
360 |
Q |
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| T |
7926847 |
gtacatcatttcttgatagagatggtgtttttaaagcttttaaacgtgcatttttcacaatattcatcatcgaccatcatta |
7926928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 7926787 - 7926848
Alignment:
| Q |
188 |
caccccaatttttcataaataacccc-gtgtgagttaacatgcgctgatttcttgtgtgagt |
248 |
Q |
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| T |
7926787 |
caccccgatttttcataaataaccccagtgtgagttaacatgcgctgatttcttgtgtgagt |
7926848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 11116808 - 11116858
Alignment:
| Q |
298 |
agatggtgtttttaaagcttttaaacgtgcatttttcacaatattcatcat |
348 |
Q |
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| T |
11116808 |
agatgttgttttttaagcctttaaacgtgcattttgcacaatatccatcat |
11116858 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 26603647 - 26603782
Alignment:
| Q |
220 |
gttaacatgcgctgatttcttgtgtgagttaatatgcgtcggttttaggtaggctaaccgtacataatttcttgatagagatggtgtttttaaagctttt |
319 |
Q |
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| T |
26603647 |
gttaacatgcgctggtttccagcatgagttaacatgtgtcagttttaggcaggctaacataacaacatttcttgacagagatgttttttt--aagcccct |
26603744 |
T |
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| Q |
320 |
aaacgtgcatttttcacaatattcatcatcgaccatca |
357 |
Q |
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| T |
26603745 |
aaacttgcatttttcacaatatccattatcgactatca |
26603782 |
T |
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