View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031_high_6 (Length: 286)
Name: NF5031_high_6
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 49464061 - 49464335
Alignment:
| Q |
11 |
cacagacacaaaattaattgaatgtaatcatatatgttggtgttgtatggtacaccaaacacacatttcatcataagtctagtgatattgagataaaaca |
110 |
Q |
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| T |
49464061 |
cacagacacaaaattaattgaatgtaatcatatatgttggtgttgtatggtacaccaaacacacatttcatcataagtctagtgatattgagataaaaca |
49464160 |
T |
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| Q |
111 |
ataaaacacaagggacaactcttcacgcaaacaattacctgatattaacgctatactatagtactaaaaaattgaaacaggcctagtaactactacgtac |
210 |
Q |
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| T |
49464161 |
ataaaacacaagggacaaatcttcacgcaaacaattacctgatattaacgctacactatagtactaaaaaattgaaacaggcctagtaactactacgtac |
49464260 |
T |
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| Q |
211 |
acaaataaaataaaaaatgaaataggcctaattgcaataattattgaaaggaggtagcatagggacaagatagtac |
286 |
Q |
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| T |
49464261 |
acaaataaga-aaaaaatgaaataggcctaattgcaataattattgaaaggaggtagcatagggacaagatagtac |
49464335 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 9906799 - 9906834
Alignment:
| Q |
21 |
aaattaattgaatgtaatcatatatgttggtgttgt |
56 |
Q |
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| T |
9906799 |
aaattaattgaatgtaatcatatatgttggttttgt |
9906834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 11601702 - 11601736
Alignment:
| Q |
21 |
aaattaattgaatgtaatcatatatgttggtgttg |
55 |
Q |
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| T |
11601702 |
aaattaattgaatgtaatcacatatgttggtgttg |
11601736 |
T |
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