View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031_low_1 (Length: 455)
Name: NF5031_low_1
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 449
Target Start/End: Complemental strand, 6262034 - 6261605
Alignment:
| Q |
20 |
gtaactaactattacatctaatgtgataactagtctagctagtttgtgcatgtttgaattgacggcgagtttgacagaattacggtgtcactcaaaatca |
119 |
Q |
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| T |
6262034 |
gtaactaactattacatctaatgtgataactagtctagctagtttgtgcatgtttgaattgacggcgagtttgacagaatcacgatgtcactcaaaatca |
6261935 |
T |
|
| Q |
120 |
gtgtcatcgtgattatgtcaaattcacggtgatttcaaataagttcttaatgaagtggaatagatcatcacttacatctcacttgttcatctttacaaat |
219 |
Q |
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| T |
6261934 |
gtgtcatcgtgattatgtcaaaatcacagtgatttcaaacaagttcttaatgaagtggaatagatcatcacttacatctcacttgttcatctttacaaat |
6261835 |
T |
|
| Q |
220 |
ctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttc |
319 |
Q |
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| T |
6261834 |
ctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttc |
6261735 |
T |
|
| Q |
320 |
cccaaatccaaaccaacactcaaactcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcacccacc |
419 |
Q |
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| T |
6261734 |
cccaaatccaaaccaacactcaaactcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcacccacc |
6261635 |
T |
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| Q |
420 |
ctccacctcccacgccaatcttcatctcac |
449 |
Q |
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| T |
6261634 |
ctccacctcccacgccaatcttcatctcac |
6261605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 6270889 - 6270699
Alignment:
| Q |
177 |
gaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaaccca |
276 |
Q |
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|||||||| ||||||||| |||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||| ||| ||||||| || |
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| T |
6270889 |
gaatagattatcacttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagaca |
6270790 |
T |
|
| Q |
277 |
taaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctca |
367 |
Q |
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||||| | ||||| | |||||| ||| |||| || |||||||| || |||||||||| ||||||| ||||||||| || |||||||| |
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| T |
6270789 |
aaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
6270699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 17240693 - 17240728
Alignment:
| Q |
64 |
tgtgcatgtttgaattgacggcgagtttgacagaat |
99 |
Q |
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| T |
17240693 |
tgtgcatgtttgaattgacggtgagtttgacagaat |
17240728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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