View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5031_low_3 (Length: 392)
Name: NF5031_low_3
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_low_3 |
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| [»] scaffold1243 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 32799189 - 32799556
Alignment:
| Q |
13 |
acccacacaaatagtgtcgtcatgcgagagtactctcctatgaagaagattatctttggtggggagtcgattgcgaagtaatctccaaacgaacatagac |
112 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799189 |
acccacacaaatagtgtcgtcatgcgggaatattctcctacgaagaagattatctttggtggggagtcgattgcgaagtaatctccaaacgaacatagac |
32799288 |
T |
|
| Q |
113 |
acctttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgac--atcgtgaggtactgataagtccccataacggt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
32799289 |
acctttaacggaacatgtttcaaccaggcagtatcgaaaaggcctgtctctataggtatggccgacatatcgtgaggtactgataagtccccttaacggt |
32799388 |
T |
|
| Q |
211 |
ataaccactaa-taggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatc |
309 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32799389 |
ataaccactaattaggatcaataatccaacgccacctatcaagagtagaatcctgcaaaagaacattacacaataaggacgagcattccacaacggaatc |
32799488 |
T |
|
| Q |
310 |
ctcttcccacgct-aaaaaacgatatatattatttaaattagtatatctatatgagctataaaaataa |
376 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32799489 |
ctcttcccacgctaaaaaaacgatatatattatttaaattagtatatctatatgggctataaaaataa |
32799556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 116 - 330
Target Start/End: Complemental strand, 32711087 - 32710873
Alignment:
| Q |
116 |
tttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacggtataac |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
32711087 |
tttaacggaacatgtttcaaccaagcagcatcgaaaaggccagtctctgtaggtgtgtcagacatcgtgaggtactgataagtccccttaaccgtataac |
32710988 |
T |
|
| Q |
216 |
cactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctcttc |
315 |
Q |
| |
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| ||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
32710987 |
cgctaataggatcaagaatccaaagctacctgtcaagagtggaatcctgcaaaacaacattacacaacaaggacgagcattccacaacggaatcctcttc |
32710888 |
T |
|
| Q |
316 |
ccacgctaaaaaacg |
330 |
Q |
| |
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|||||| || ||||| |
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| T |
32710887 |
ccacgccaacaaacg |
32710873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 291
Target Start/End: Complemental strand, 15175285 - 15175182
Alignment:
| Q |
188 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
287 |
Q |
| |
|
|||||||||||| || |||||| ||||| |||||||||||||||| ||| | ||||| | |||||||||||||||||||| || || |||||| |||| |
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|
| T |
15175285 |
tactgataagtctccttaacggagtaaccgctaataggatcaagaacccaccgccacctgttaagagtagaatcctgcaaaacaatatcacacaacaagg |
15175186 |
T |
|
| Q |
288 |
acga |
291 |
Q |
| |
|
|||| |
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|
| T |
15175185 |
acga |
15175182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 321
Target Start/End: Original strand, 9600759 - 9601036
Alignment:
| Q |
44 |
actctcctatgaagaagattatctttggtggggagtcgattgcgaagtaatctccaaacgaacatagacacctttaacggaacatgtttcaaccaggcag |
143 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| || | |
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| T |
9600759 |
actctcctacgaagaagattatctttggtggggagtctattgcgaagtagtcgccaaacgaacactgacacctttaacggaacctgtttcaaccaagctg |
9600858 |
T |
|
| Q |
144 |
catcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacggtataaccactaataggatcaagaatccaacacca |
243 |
Q |
| |
|
||| |||||||||||||| | || | ||||||||||| || |||||||||||| ||| ||||||||| |||||||||||||| ||||| | ||| |
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| T |
9600859 |
catgaaaaaggccagtctccaataatgtgtcagacatcgtgagatattgataagtccccttaatggtataaccgctaataggatcaaggatccaccgcca |
9600958 |
T |
|
| Q |
244 |
ccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctcttcccacgc |
321 |
Q |
| |
|
|| |||||||||||||||| ||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| |
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|
| T |
9600959 |
cctgtcaagagtagaatcctacaaaacaacataacacaccaaggacgaacattccgtaatagactcctcttcccacgc |
9601036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 321
Target Start/End: Original strand, 9828330 - 9828607
Alignment:
| Q |
44 |
actctcctatgaagaagattatctttggtggggagtcgattgcgaagtaatctccaaacgaacatagacacctttaacggaacatgtttcaaccaggcag |
143 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| || | |
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|
| T |
9828330 |
actctcctacgaagaagattatctttggtggggagtctattgcgaagtagtcgccaaacgaacactgacacctttaacggaacctgtttcaaccaagctg |
9828429 |
T |
|
| Q |
144 |
catcgaaaaggccagtctctgtaggtatggccgacatcgtgaggtactgataagtccccataacggtataaccactaataggatcaagaatccaacacca |
243 |
Q |
| |
|
||| |||||||||||||| | || | ||||||||||| || |||||||||||| ||| ||||||||| |||||||||||||| ||||| | ||| |
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|
| T |
9828430 |
catgaaaaaggccagtctccaataatgtgtcagacatcgtgagatattgataagtccccttaatggtataaccgctaataggatcaaggatccaccgcca |
9828529 |
T |
|
| Q |
244 |
ccaatcaagagtagaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctcttcccacgc |
321 |
Q |
| |
|
|| |||||||||||||||| ||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| |
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|
| T |
9828530 |
cctgtcaagagtagaatcctacaaaacaacataacacaccaaggacgaacattccgtaatagactcctcttcccacgc |
9828607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 62 - 326
Target Start/End: Complemental strand, 21830000 - 21829736
Alignment:
| Q |
62 |
ttatctttggtggggagtcgattgcgaagtaatctccaaacgaacatagacacctttaacggaacatgtttcaaccaggcagcatcgaaaaggccagtct |
161 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| || ||||||||||| || |||||||||||||||||||||||||| || || || ||||| | |||| |
|
|
| T |
21830000 |
ttatctttggtagggagtctattgcgaagtagtcgccaaacgaacacggaaacctttaacggaacatgtttcaaccaagctgcgtcaaaaagacatgtct |
21829901 |
T |
|
| Q |
162 |
ctgtaggtatggccgacatcgtgaggtactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatc |
261 |
Q |
| |
|
| | | | || | | |||||| || ||||||||||| ||| |||||| ||||||| ||||||||||||||||||| ||||||| ||||||| |||||| |
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|
| T |
21829900 |
ccattgatgtgtcgggcatcgtaagatactgataagtacccttaacggaataaccattaataggatcaagaatccaccaccacctgtcaagagaagaatc |
21829801 |
T |
|
| Q |
262 |
ctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctcttcccacgctaaaa |
326 |
Q |
| |
|
|||||||| |||||||||||| ||||||| | | |||| ||| ||||||| ||||||||| |||| |
|
|
| T |
21829800 |
ctgcaaaacaacattacacaacaaggacgggcactccataacagaatccttttcccacgccaaaa |
21829736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 317
Target Start/End: Original strand, 30187803 - 30188061
Alignment:
| Q |
58 |
aagattatctttggtggggagtcgattgcgaagtaatctccaaacgaacatagacacctttaacggaacatgtttcaaccaggcagcatcgaaaaggcca |
157 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||| | ||||||||||||||| || ||||||| | |||||||||||| ||| | |||| ||||||||| |
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|
| T |
30187803 |
aagattatctttagtgggaagtcggctgcgaagaagtctccaaacgaacattgagacctttagcagaacatgtttcagccaaactgcatacaaaaggcca |
30187902 |
T |
|
| Q |
158 |
gtctc-tgtaggtatggccgacatcgtgaggtactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagta |
256 |
Q |
| |
|
|| || ||| | | || | |||||| | ||||||||||||||| |||||| ||||||| ||||||||||||||||||| | ||||| ||| | || |
|
|
| T |
30187903 |
gtgtcctgt-gttgtgtcaagcatcgtaaa-tactgataagtccccttaacggaataaccattaataggatcaagaatccaccgccacctgtcagaaata |
30188000 |
T |
|
| Q |
257 |
gaatcctgcaaaagaacattacacaataaggacgagtattccacaacggaatcctcttccc |
317 |
Q |
| |
|
|||||||||| | ||||||| |||| |||||||| | |||| ||||| |||||||||| |
|
|
| T |
30188001 |
aaatcctgcaagacaacattagacaacaaggacgaacactccatgacggagtcctcttccc |
30188061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 14092160 - 14092056
Alignment:
| Q |
178 |
catcgtgaggtactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacatta |
277 |
Q |
| |
|
|||||| || ||||| ||||||||| |||||| ||||||| || || |||||||||||| | ||| | |||| | ||||||||||||| | ||||||| |
|
|
| T |
14092160 |
catcgtaagatactggtaagtccccttaacggaataaccattagtacaatcaagaatccaccgccatctgtcaaaaatagaatcctgcaagacaacatta |
14092061 |
T |
|
| Q |
278 |
cacaa |
282 |
Q |
| |
|
|||| |
|
|
| T |
14092060 |
gacaa |
14092056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1243 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1243
Description:
Target: scaffold1243; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 1444 - 1345
Alignment:
| Q |
188 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
287 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||| || || |||||| |||| |
|
|
| T |
1444 |
tactgataagtccccttaacggagtaaccgttaataggatcaagaatccaccgccacctatcaagaacatgatcctgcaaaataatatgacacaacaagg |
1345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 15160836 - 15160939
Alignment:
| Q |
188 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataagg |
287 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||| || || |||||| | || |
|
|
| T |
15160836 |
tactgataagtccccttaacggagtaacagttaataggatcaagaatccaccgccacctatcaagaacatgatcctgcaaaataatatgacacaacaggg |
15160935 |
T |
|
| Q |
288 |
acga |
291 |
Q |
| |
|
|||| |
|
|
| T |
15160936 |
acga |
15160939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 15184425 - 15184490
Alignment:
| Q |
188 |
tactgataagtccccataacggtataaccactaataggatcaagaatccaacaccaccaatcaaga |
253 |
Q |
| |
|
||||||||||||||| ||| || ||||| ||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
15184425 |
tactgataagtccccttaatggagtaaccgttaataggatcaagaatccaccgccacctatcaaga |
15184490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 15170876 - 15170948
Alignment:
| Q |
219 |
taataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacga |
291 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| | ||||||||||| || || |||||| |||||||| |
|
|
| T |
15170876 |
taataggatcaaaaatccaccaccacctatcaagaacatgatcctgcaaaataatatgacacaacaaggacga |
15170948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 15179648 - 15179720
Alignment:
| Q |
219 |
taataggatcaagaatccaacaccaccaatcaagagtagaatcctgcaaaagaacattacacaataaggacga |
291 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| | ||||||||||| || || |||||| |||||||| |
|
|
| T |
15179648 |
taataggatcaaaaatccaccaccacctatcaagaacatgatcctgcaaaataatatgacacaacaaggacga |
15179720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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