View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5031_low_4 (Length: 379)

Name: NF5031_low_4
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5031_low_4
NF5031_low_4
[»] chr1 (3 HSPs)
chr1 (10-101)||(7926611-7926702)
chr1 (279-360)||(7926847-7926928)
chr1 (188-248)||(7926787-7926848)
[»] chr6 (1 HSPs)
chr6 (298-348)||(11116808-11116858)
[»] chr5 (1 HSPs)
chr5 (220-357)||(26603647-26603782)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 7926611 - 7926702
Alignment:
Q  10 acatcatcaatcatcatccattcagtggtgaagctgtcacaaccacatgacatggttatgtttttcatcttccacgtggctccattgtgggc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926611 acatcatcaatcatcatccattcagtggtgaagctgtcacaaccacatgacatggttatgtttttcatcttccacgtggctccattgtgggc 7926702  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 7926847 - 7926928
Alignment:
Q  279 gtacataatttcttgatagagatggtgtttttaaagcttttaaacgtgcatttttcacaatattcatcatcgaccatcatta 360  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926847 gtacatcatttcttgatagagatggtgtttttaaagcttttaaacgtgcatttttcacaatattcatcatcgaccatcatta 7926928  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 7926787 - 7926848
Alignment:
Q  188 caccccaatttttcataaataacccc-gtgtgagttaacatgcgctgatttcttgtgtgagt 248  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7926787 caccccgatttttcataaataaccccagtgtgagttaacatgcgctgatttcttgtgtgagt 7926848  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 11116808 - 11116858
Alignment:
Q  298 agatggtgtttttaaagcttttaaacgtgcatttttcacaatattcatcat 348  Q
    ||||| ||||||| |||| |||||||||||||||| |||||||| ||||||    
T  11116808 agatgttgttttttaagcctttaaacgtgcattttgcacaatatccatcat 11116858  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 26603647 - 26603782
Alignment:
Q  220 gttaacatgcgctgatttcttgtgtgagttaatatgcgtcggttttaggtaggctaaccgtacataatttcttgatagagatggtgtttttaaagctttt 319  Q
    |||||||||||||| ||||  |  |||||||| ||| ||| |||||||| ||||||||   |||  ||||||||| ||||||| | ||||  ||||   |    
T  26603647 gttaacatgcgctggtttccagcatgagttaacatgtgtcagttttaggcaggctaacataacaacatttcttgacagagatgttttttt--aagcccct 26603744  T
Q  320 aaacgtgcatttttcacaatattcatcatcgaccatca 357  Q
    |||| ||||||||||||||||| ||| |||||| ||||    
T  26603745 aaacttgcatttttcacaatatccattatcgactatca 26603782  T

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