View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031_low_6 (Length: 363)
Name: NF5031_low_6
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 67 - 350
Target Start/End: Original strand, 4519859 - 4520142
Alignment:
| Q |
67 |
gagctctggttaggaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaaagagaattttaaacagcagaaacttcaaggatt |
166 |
Q |
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| T |
4519859 |
gagctctggttaggaaatgttccactgcaaagtcctcaaaattctaaaaccaaaaataacacttaaaagagaattttaaacagcagaaacttcaaggatt |
4519958 |
T |
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| Q |
167 |
gaaatgaagtgtaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaaaattgaaaat |
266 |
Q |
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| T |
4519959 |
gaaatgaagtctaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaaaattgaaaat |
4520058 |
T |
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| Q |
267 |
agagaaggtaacagcaagaaaatagcataagcaatgttacctttttgctacttttgagtgctaaatttgtgacagaaatgatga |
350 |
Q |
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| T |
4520059 |
agagaaggtaacagcaagaaaatagcataagcaatgtttcatttttgctacttttgagtgctaaacttgtgacagaaatcatga |
4520142 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 5838337 - 5838392
Alignment:
| Q |
78 |
aggaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaa |
133 |
Q |
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| T |
5838337 |
aggaaatgccccactataaaatcctcaaaattctgaaaccaaaaataacacttaaa |
5838392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 38792158 - 38792212
Alignment:
| Q |
80 |
gaaatgttccactacaaagtcctcaaaattctaaaaccaaaaataacacttaaaa |
134 |
Q |
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|||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
38792158 |
gaaatgctccacaacaaagtcctcgaaattctgaaaccaaaaataactcttaaaa |
38792212 |
T |
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