View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5031_low_9 (Length: 260)
Name: NF5031_low_9
Description: NF5031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5031_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 16846223 - 16846475
Alignment:
| Q |
1 |
acaccaaactcagaacgtttacgccttgtcctcataacaacacgtgtgattgggaagagcttcaacagaatctttcttcgagtcgttggtatgcttcgaa |
100 |
Q |
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| T |
16846223 |
acaccaaactcagaacgtttaccccttgtcctcataacaacacgtgtgattgggaagagcttcaacagaatctttcttcgagtcgttggtatgcttcgaa |
16846322 |
T |
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| Q |
101 |
tcagattctaccaaacggtagaatcattatcgttggtggtcgttcatctttctcgtatgagtttgttcccaagagattaaacgacgcgtcgttttatcat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16846323 |
tcagattctaccaaacggtagaatcattgtcgttggtggtcgttcatctttctcgtatgagtttgttcccaagagattaaacgacgcgtcgttttatcat |
16846422 |
T |
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| Q |
201 |
cttcgtttcttgcaactcacgcgagattccaatcctggtgaagagaataatct |
253 |
Q |
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| T |
16846423 |
cttcgtttcttgcaactcacgcgagattccaatcctggtgaagagaataatct |
16846475 |
T |
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