View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032-Insertion-1 (Length: 1139)
Name: NF5032-Insertion-1
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 7 - 784
Target Start/End: Original strand, 13408376 - 13409151
Alignment:
| Q |
7 |
ataatggtgatagagagttatcagaaatggtttcagctctaacacatgttgcatcatcagggtcaaatcaaatgagtagtaatgaatggattcaaaggag |
106 |
Q |
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| T |
13408376 |
ataatggtgatagagagttatcagaaatggtttcagctctaacacatgttgcatcatcagggtcaaatcaaatgagtagtaatgaatggattcaaaggag |
13408475 |
T |
|
| Q |
107 |
tgattttcctttgatatcaagttttggaagtgcttcatcttcttcttcttatgcttcaagttcatggagtggtcaaaaaagagggcgtgatgaagaaagt |
206 |
Q |
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| T |
13408476 |
tgattttcctttgatatcaagttttggaaatgcttcatcttcttcttcttatgcttcaagttcatggagtggtcaaaaaagagggcgtgatgaagaaagt |
13408575 |
T |
|
| Q |
207 |
agtggttctaatcagtatataactcaagctgttgttcctcctagactctttagaactgttatggtaccttctcaagaatcatcctcattatcatcaggtg |
306 |
Q |
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| T |
13408576 |
agtggttctaatcagtatataactcaagctgttgttcctcctagactctttagaactgttatggtaccttctcaagaatcatcctcattatcatcaggtg |
13408675 |
T |
|
| Q |
307 |
cacttctatatcatactttttctt-actccatcgtctacgcctg------cagtatgttgtcatagttatacaaacggttggattttatcgcttaaaatc |
399 |
Q |
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| T |
13408676 |
cacttctatatcatactttttcttaactccatcgtctacgcctgcagtatcagtatggtgtcatagttatacaaacggttgaattttatcgcttaaaatc |
13408775 |
T |
|
| Q |
400 |
taaccgttataacagctacaacaccatactacagtcgtagatgatttaacttattttttcattcatttcttgatcacaaaacattattgtttgaatcatc |
499 |
Q |
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| T |
13408776 |
taaccgttataacagctacaacaccatactgcagttgtagatgatttaacttattttttcattcatttcttgatcacaaaacattattgtttgaatcatc |
13408875 |
T |
|
| Q |
500 |
tacaactgcagtatggtgccacagttgtaagaacagttagattttatcgcttaaaatctaacgattattataactataacaccagattgctgcgggccag |
599 |
Q |
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| T |
13408876 |
tacaactgcagtatggtgccacagttgtaagaacggttacattttatcgcttaaaatctaacggttattataactataacaccagacagctgcgggctag |
13408975 |
T |
|
| Q |
600 |
atgattcaacttatttttcattcatttcttgatcacaaaacattattgtttgcacatattcatcacttggtttatatgtgttgaagcttgatgtttcatt |
699 |
Q |
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| T |
13408976 |
atgattcaagttatttttcattcatttcttgatcacaaaacattattatttgcacatattcatcacttggtttatatgtgttgaagcttgatgtttcatt |
13409075 |
T |
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| Q |
700 |
gtttttatcgtttgattcttagttttatctaaagccaaaaatggtgaacaccattattagcattattttaaacttatctagctaa |
784 |
Q |
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| T |
13409076 |
---------gtttgattcttagttttatctaaagccaaaaatggtgaacaccattattagcattattttaaacttatctagctaa |
13409151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 821 - 1028
Target Start/End: Original strand, 13409205 - 13409414
Alignment:
| Q |
821 |
attaacgattcactattcacctcttatcttgtgcaggtgcatatcatttccatattatactgcatgcataaaacatacttcatttttcacannnnnnnnc |
920 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |
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| T |
13409205 |
attaaggattcactattcacctcttatcttgtgcaggtgcatatcatttcaatgttatactgcatgcataaaacatacttcatttttcacattttttttc |
13409304 |
T |
|
| Q |
921 |
ttcaatctaa-cattttgtcataattcaataccttatctttccatactaactaaatcaaaacaaact-aatcaattgtcctatattaacctcaacataca |
1018 |
Q |
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| T |
13409305 |
ttcaatctaaacattttgtcataattcaataccttatctttccatactaactaaatcaaaacaaactaaatcaattgttctatattaaactcaacataca |
13409404 |
T |
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| Q |
1019 |
atttaataat |
1028 |
Q |
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|||||||||| |
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| T |
13409405 |
atttaataat |
13409414 |
T |
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Back To:
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