View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032-Insertion-10 (Length: 189)
Name: NF5032-Insertion-10
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 6173815 - 6173968
Alignment:
| Q |
8 |
agatgtgggatgtgcagtcttcnnnnnnncataaaagcacttgttttaagaattcgtgcatgtatatgtcgcaccatttagcattgctgattttatttta |
107 |
Q |
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| T |
6173815 |
agatgtgggatgtgcagtcttcaaaaaaacataaaagcacttgttttaagaattcgtgcatgtatatgtcgcaccatttagcattgctgattttatttta |
6173914 |
T |
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| Q |
108 |
atcaaactttctccctacacaaaagatg---aataagagttagagttctctcca |
158 |
Q |
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| T |
6173915 |
atcaaactttctccctacacaaaagatgattaataagagttagagttctctcca |
6173968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 6142488 - 6142449
Alignment:
| Q |
60 |
ttcgtgcatgtatatgtcgcaccatttagcattgctgatt |
99 |
Q |
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| T |
6142488 |
ttcgtgcatatatatgtcgcaccatttagcattactgatt |
6142449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 7740380 - 7740435
Alignment:
| Q |
43 |
agcacttgttttaagaattcgtgcatgtatatgtcgcaccatttagcattgctgat |
98 |
Q |
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| T |
7740380 |
agcacttgttttaagaattcgtgcatgtataagtagcgctatttagcattgctgat |
7740435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 11941041 - 11941073
Alignment:
| Q |
60 |
ttcgtgcatgtatatgtcgcaccatttagcatt |
92 |
Q |
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| T |
11941041 |
ttcgtgcatatatatgtcgcaccatttagcatt |
11941073 |
T |
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