View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5032-Insertion-12 (Length: 256)

Name: NF5032-Insertion-12
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5032-Insertion-12
NF5032-Insertion-12
[»] chr7 (2 HSPs)
chr7 (8-86)||(7978020-7978098)
chr7 (84-188)||(7978329-7978432)
[»] chr4 (3 HSPs)
chr4 (24-83)||(553922-553981)
chr4 (23-81)||(7308728-7308786)
chr4 (27-83)||(1546030-1546086)
[»] chr5 (1 HSPs)
chr5 (10-73)||(17207117-17207180)
[»] chr8 (1 HSPs)
chr8 (30-74)||(34935830-34935874)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 7978020 - 7978098
Alignment:
Q  8 gaagtagcatctgatgttgagggaggtgaggttgatgaacctttggaagaggctaggaaggaaagggcgtgttgaactc 86  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  7978020 gaagtagcatctgaggttgagggaggtgaggttgatgaaccttcggaagaggctagggaggaaagggcgtgttgaactc 7978098  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 7978329 - 7978432
Alignment:
Q  84 ctcttcattttcatgtttcggacgttggtaggtgtttgattttgaaggtttaatgnnnnnnnnagggtttaggttaattttcatcaaaactataagcatg 183  Q
    |||||| ||||||| || |||||||||||||||||||||||| ||||||||| ||        |||||||||||||||||||||||||||||||| ||||    
T  7978329 ctcttccttttcattttccggacgttggtaggtgtttgattt-gaaggtttagtgttttttttagggtttaggttaattttcatcaaaactataaccatg 7978427  T
Q  184 tagta 188  Q
    |||||    
T  7978428 tagta 7978432  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 553922 - 553981
Alignment:
Q  24 ttgagggaggtgaggttgatgaacctttggaagaggctaggaaggaaagggcgtgttgaa 83  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||||||    
T  553922 ttgagggaggtgaggttggtgaacctttggaaaaggcgaggaagtaaagggcgtgttgaa 553981  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 7308728 - 7308786
Alignment:
Q  23 gttgagggaggtgaggttgatgaacctttggaagaggctaggaaggaaagggcgtgttg 81  Q
    |||||||||||||||||||  ||||||||| |||| |  ||| ||||||||||||||||    
T  7308728 gttgagggaggtgaggttggggaacctttgaaagaagtgagggaggaaagggcgtgttg 7308786  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 1546030 - 1546086
Alignment:
Q  27 agggaggtgaggttgatgaacctttggaagaggctaggaaggaaagggcgtgttgaa 83  Q
    |||||||||||| || ||||||||| || ||||| | |||| |||||||||||||||    
T  1546030 agggaggtgaggctggtgaaccttttgaggaggcaatgaagaaaagggcgtgttgaa 1546086  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 17207180 - 17207117
Alignment:
Q  10 agtagcatctgatgttgagggaggtgaggttgatgaacctttggaagaggctaggaaggaaagg 73  Q
    |||||||| ||| ||||||||||||||| ||| |||| || |||||||||| ||| ||||||||    
T  17207180 agtagcatgtgaagttgagggaggtgagattggtgaatctatggaagaggcgagggaggaaagg 17207117  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 34935874 - 34935830
Alignment:
Q  30 gaggtgaggttgatgaacctttggaagaggctaggaaggaaaggg 74  Q
    |||||||||||| | |||||||||||||||| ||||||| |||||    
T  34935874 gaggtgaggttggtaaacctttggaagaggcgaggaagggaaggg 34935830  T

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