View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032-Insertion-2 (Length: 1049)
Name: NF5032-Insertion-2
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-2 |
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| [»] scaffold2072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 348 - 1040
Target Start/End: Original strand, 1425114 - 1425801
Alignment:
| Q |
348 |
ataggcaacatttgaaagtccaggtatcgctcttaatcatcattatatattacaaagatgtgttatcttttcaaagctcttgaattcttccaattgctaa |
447 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425114 |
ataggcaacatttgaaagtccagatattgctcttaatcatcattatatattacaaagatgtgttatcttttcaaagctcttgaattcttccaattgctaa |
1425213 |
T |
|
| Q |
448 |
gtcttagacaatgtcaaaatattcatgctaaaaataacacctttcattcttgaattnnnnnnngtggaacctcattgactgcatgaactgagcttgtcga |
547 |
Q |
| |
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||||||||| ||||| |||||||||||||||| ||||||| ||||||| |||||| ||| ||||||||||||||||| ||||||||||||| | |
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| T |
1425214 |
gtcttagaccatgtcgaaatattcatgctaaagataacacttttcatttttgaatgaacaaaagtgaaacctcattgactgcattaactgagcttgtcaa |
1425313 |
T |
|
| Q |
548 |
aattacatactaacaatgagttaacaagttgcagcagctaatgcccaatattcaacttcaaatgatgatctaaaaatggtattttacttttttgttctct |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
1425314 |
aattacatactaacaatgagttaacaagttgcagtagctaatgcccaatattcaacttcaaatgacgatctagaaatggtattttacttttttgttctct |
1425413 |
T |
|
| Q |
648 |
atgaaatgagataagaaccaataaagaagcatgagcctgagaaatatatcctatatatataataaatgcatccatctcaatcttcatttgagaaaccatg |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1425414 |
atgaaatgagataagaaccaataaagaagcatgagcctgagaaatatatcctatatatataataaatgcatccatctcaatcttcattcgagaaaccatg |
1425513 |
T |
|
| Q |
748 |
taactgtatagaatagtctagtggaaagaatagaccatgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtg |
847 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425514 |
taactgtatagaatagtctagtggaaagaatagaccatgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtg |
1425613 |
T |
|
| Q |
848 |
ggtttggataagaattagccaagttgttgcatggatatctagttatgtagtgtggagatgataaattcaatgaatgagttcttctgt-agtatgaatatc |
946 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| || |||||||||||| || |||| ||| |||||||||||| |
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|
| T |
1425614 |
ggtttggataagaattagccaagttgttgcat-gatatctagttatgtaatgt-gagataatgaattcaatgaataag-tcttttgtaagtatgaatatc |
1425710 |
T |
|
| Q |
947 |
accaatgtggaataatcatcattatgtaacttggataagaagtattaagagggttagaatgtagg-taagatccacgtaatcttcagtcaccaag |
1040 |
Q |
| |
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|||||||| | || |||||||||||||||||| ||| ||||||||| ||| |||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
1425711 |
accaatgt-gtattatcatcattatgtaactt-gat-ggaagtattagaaggtttag-atgtaggttaagatccaagtaatcttcagtcaccaag |
1425801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 566 - 1040
Target Start/End: Original strand, 1447418 - 1447892
Alignment:
| Q |
566 |
agttaacaagttgcagcagctaatgcccaatattcaacttcaaatgatgatctaaaaatggtattttacttttttgttctctatgaaatgagataagaac |
665 |
Q |
| |
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|||||||| ||| ||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1447418 |
agttaacacgtttcagcaactaatgtccgatattcaacttcaaatgatgatctagaaatggtattttactttttggttctctatgaaatgagataagaac |
1447517 |
T |
|
| Q |
666 |
caataaagaagcatgagcctgagaaatatatcctatatatataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtc |
765 |
Q |
| |
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||| || |||||||||||| |||||||||||| |||| |||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
1447518 |
caa-aatgaagcatgagcccgagaaatatatcgtata------ataaatgcatacattccaaccttcatttgagaaaccatgtaactgtatacaatagtc |
1447610 |
T |
|
| Q |
766 |
tagtggaaagaata-gaccatgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaatta |
864 |
Q |
| |
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||||||||| || | |||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1447611 |
tagtggaaaaaaaaagaccatcgactagccaatgcttaaggtatttgaaaactctacaagcagtactacaatgaatatttgtgggtttggataagaatta |
1447710 |
T |
|
| Q |
865 |
gccaagttgttgcatg--------gatatctagttatgtagtgtggagatgataaattcaatgaatgagttcttctgt-agtatgaatatcaccaatgtg |
955 |
Q |
| |
|
|| |||||||| || |||||||||||||||| ||| ||||| | ||||||||||||||| |||| ||| |||| |||||||||||||| | |
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| T |
1447711 |
gctaagttgttaactgatgaaggtgatatctagttatgtaatgt-gagatactgaattcaatgaatgag-tcttttgtaagtaggaatatcaccaatggg |
1447808 |
T |
|
| Q |
956 |
-gaataatcatcattatgtaacttggataagaagtattaagagggttagaatgtagg-taagatccacgtaatcttcagtcaccaag |
1040 |
Q |
| |
|
| || |||||||||||||||||| ||| |||||||||| ||| |||| ||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
1447809 |
tgtattatcatcattatgtaactt-gat-agaagtattagaaggtttag-atgtaggttaagatccaagtaatcttcagtcaccaag |
1447892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 128 - 354
Target Start/End: Original strand, 1424118 - 1424341
Alignment:
| Q |
128 |
catatataatattttgacttaaaatatcagtgccgatattagtccacattagaatagttaggtgctctattagatgttgacttcacctcttgtaaccatg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1424118 |
catatataatattttgacttaaaatatcagtgccgatattagtccacattagaatagttaggtgctctattagatgttgacttcacctcttgtaaccatg |
1424217 |
T |
|
| Q |
228 |
tcaagctatagttttgtttggactaaagaaaagcacctacataaaaagcattctaacattttaaggtcatatgttctaaagatcaaaattacctgagaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
1424218 |
tcaagctatagttttgtttggactaaagaaaagctcctacataaaa---attctacaatttcaaggtcatatgttgtaaagatcaaaattacctgaaaaa |
1424314 |
T |
|
| Q |
328 |
cacaatcgccaatctaagttataggca |
354 |
Q |
| |
|
|||||||||||||||||| |||||||| |
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|
| T |
1424315 |
cacaatcgccaatctaagctataggca |
1424341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 1423968 - 1424092
Alignment:
| Q |
7 |
aatatcttgtatttagctataattgcaacaatcagtcagtctagcaacacctcatcgtgatacccagctagtctcggaaaggatccacttgcagaagtcc |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1423968 |
aatattttgtatttagctataattgcaacaatcaatcagtctagcaacacctcatcgtgatacccagcttgtctcggaaaggatccacttgcagaagtcc |
1424067 |
T |
|
| Q |
107 |
atcatgcataggatcttacaacata |
131 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1424068 |
atcatgcataggatcttacaacata |
1424092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 172 - 422
Target Start/End: Original strand, 17393893 - 17394142
Alignment:
| Q |
172 |
cacattagaatagttaggtgctctattagatgt-tgacttcacctcttgtaaccatgtcaagctatagttttgtttggactaaagaaaagcacctac--a |
268 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||| | |
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|
| T |
17393893 |
cacattagaatagttaggtgctctgttagatgtgtgacttcacctctcgtaaccatgtcaagctatagtttttttaactctaaagaaaagcatctaccaa |
17393992 |
T |
|
| Q |
269 |
taaaaagcattctaacattttaaggtcatatgttctaaagatcaaaattacctgagaaacacaatcgccaatctaagttataggcaacatttgaaagtcc |
368 |
Q |
| |
|
||||||||||||||| |||| |||||||| | ||| |||||||||||| |||||||||||| | | | |||| |||||||||||||| ||||||| |
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|
| T |
17393993 |
taaaaagcattctaatatttgaaggtcat----tataaggatcaaaattactcaagaaacacaatcacaattataagatataggcaacatttaaaagtcc |
17394088 |
T |
|
| Q |
369 |
aggtatcgctcttaatcatcattatatattacaaagatgtgttatcttttcaaa |
422 |
Q |
| |
|
| ||| | |||||||||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
17394089 |
aagtaacactcttaatcatcattagatattacaaagacctgttatctttccaaa |
17394142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2072 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold2072
Description:
Target: scaffold2072; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 924 - 1021
Alignment:
| Q |
325 |
aaacacaatcgccaatctaagttataggcaacatttgaaagtccaggtatcgctcttaatcatcattatatattacaaagatgtgttatcttttcaaa |
422 |
Q |
| |
|
|||||||||||| ||| |||| |||||| || ||||||| ||| | ||||| |||||||||||||||| |||||||||| | ||||||||||| |||| |
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|
| T |
924 |
aaacacaatcgcaaatataagctataggaaaaatttgaatgtctaagtatcactcttaatcatcattagatattacaaatacgtgttatctttgcaaa |
1021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 5892932 - 5893016
Alignment:
| Q |
417 |
ttcaaagctcttgaattcttccaattgctaagtcttagacaatgtcaaaatattcatgctaaaaataacacctttcattcttgaa |
501 |
Q |
| |
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||||||||||||||| |||||||| ||||||||| |||| ||||| |||| ||||||||||| |||||| |||| ||||||||| |
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| T |
5892932 |
ttcaaagctcttgaactcttccaaatgctaagtcccagaccatgtcgaaatcttcatgctaaagataacatctttaattcttgaa |
5893016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 18046838 - 18046879
Alignment:
| Q |
522 |
ttgactgcatgaactgagcttgtcgaaattacatactaacaa |
563 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||||||| |
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|
| T |
18046838 |
ttgactgcattaattgagcttgtcgaaattacagactaacaa |
18046879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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