View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5032-Insertion-4 (Length: 915)
Name: NF5032-Insertion-4
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
| [»] scaffold0573 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 760; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 7 - 915
Target Start/End: Complemental strand, 5923246 - 5922342
Alignment:
| Q |
7 |
ataaatggtatgaaagggaaaaatagagggcttttattgaatgtcactgtataaactaattgaactaatggcgtgtatgcatattaaactctttcatttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5923246 |
ataaatggtatgaaagggaaaaatagagggcttttattgaatgtcactgtataaactaattgaactaatggcgtgtatgcatattaaactctttcatttt |
5923147 |
T |
|
| Q |
107 |
tagtttgaacaaataagtgttcaaaatatagacatgatgcaataacatgactattgttgacttattgggtagggatggatatgagcatcagtttattggg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5923146 |
tagtttgaacaaataagtgttcaaaatatagacatgatgcaataacatgactgttgttgacttattgggtagggatggatatgagcatgagtttattggg |
5923047 |
T |
|
| Q |
207 |
aa-atagttgaacaagtctcaagagagattaagcctcttgctatacctgttgttgaatatagagttggactggagccccaaaggaaaaatgtactttcac |
305 |
Q |
| |
|
|| || || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5923046 |
aagattgtcgaacaagtctcaagagagattaagcctcttactatacctgttgttgaatatagagttggactggagccccaaaggaaaaatgtactttcac |
5922947 |
T |
|
| Q |
306 |
ttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5922946 |
ttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggt---------aaaacaactcttgctctagaagtctataatttgat |
5922856 |
T |
|
| Q |
406 |
tgtccatcaatttgaaagttcatgctttcttgaaaacattcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaata |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5922855 |
tgtccatcaatttgaaagttcatgctttcttgaaaacattcaggaaaattcagagaaacatgggttgatatatctccaaaagatcattcttttggaaata |
5922756 |
T |
|
| Q |
506 |
attggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5922755 |
attggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatg |
5922656 |
T |
|
| Q |
606 |
tcgacgagcagaaacaattggatgcaattgctggaggaaatgattggtatggtctcggcagtagagtcatcatcacaacccggggacaaagggttgctat |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5922655 |
tcgacgagcagaaacaattggatgcaattgctggaggaaatgattggtatggtctcggcagtagagtcatcatcacaaccc-gggacaaagggttgctat |
5922557 |
T |
|
| Q |
706 |
tgtctcacggggttggaagtacgtatgaggtccatgaaattgaacaagaaggatgcttttgaattgcttagac-aaaagcatttaaaaccaac-aagttt |
803 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5922556 |
tgtctcacggggttgaaagtacgtatgaggtccatg-aattgaacaagaaggatgcttttgaattgcttagacaaaaagcatttaaaaccaacaaagttt |
5922458 |
T |
|
| Q |
804 |
gtccaaattatgcggatgttttgaatcgtgccttgacttatggttctggccttcctttggctttagaag-aatagg-tcccacttatttcat-aaacagt |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| || |||||||||||| ||||||| |
|
|
| T |
5922457 |
gtccaaattatgcggatgttttgaatcgtgccttgactcatgcttctggccttcctttggctttagaagtaataggttctcacttatttcataaaacagt |
5922358 |
T |
|
| Q |
901 |
aaaac-atgtaaatct |
915 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
5922357 |
agaacaatgtaaatct |
5922342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 7e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 167 - 606
Target Start/End: Original strand, 12589228 - 12589668
Alignment:
| Q |
167 |
cttattgggtagggatggatatgagcatcagtttattgggaa-atagttgaacaagtctcaagagagattaagcctcttgctatacctgttgttgaatat |
265 |
Q |
| |
|
|||||||| ||||||||| || |||||| |||||||||| || || ||||||||| ||| |||| | | || || |||| ||||||||| ||| || |
|
|
| T |
12589228 |
cttattggatagggatgggtacgagcatgagtttattggaaagattgttgaacaaatcttaagaaatacaaaacccgttgcattacctgttggtgattac |
12589327 |
T |
|
| Q |
266 |
agagttggactggagccccaaaggaaaaatgtactttcacttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggtggaa |
365 |
Q |
| |
|
|||||||||||||| ||||| | || |||| ||| |||||||||||||| | |||||| | || || ||||||||||||||| |||||||||| |
|
|
| T |
12589328 |
ctagttggactggagcaccaaaagcaacatgtgacttcgcttttgaatgttgggtctgatgatactgtccacatggtagggatccatgggattggtggaa |
12589427 |
T |
|
| Q |
366 |
ttggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattcgggaaaattcagagaaaca |
465 |
Q |
| |
|
| || ||||| ||||||||||||||||| ||||||| ||||| || |||| || |||| || ||||||||||| || | |||||||| |||||| | |
|
|
| T |
12589428 |
tagggaaaactactcttgctctagaagtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaa |
12589527 |
T |
|
| Q |
466 |
tgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaa |
565 |
Q |
| |
|
|||||||| |||||||||||||||| |||| || |||| ||||||||||||| || ||||||||||||||| ||||||||| ||| || |||||||| |
|
|
| T |
12589528 |
tgggttgatatatctccaaaagatccttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatgtcaatattacaacaa |
12589627 |
T |
|
| Q |
566 |
aggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
12589628 |
aggctccgccaaaagaaggttcttttgcttctagacgatgt |
12589668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 344 - 606
Target Start/End: Original strand, 31905788 - 31906050
Alignment:
| Q |
344 |
gggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaaca |
443 |
Q |
| |
|
||||||||||||| ||| || || ||||||||||| |||||||| | || |||||| |||||| | |||| |||||| || || ||||||||||| |
|
|
| T |
31905788 |
gggatccatggaagtggagggataggtaaaacaacacttgctctggctgtttataatctgattgccgatcactttgaagctttgtgttttcttgaaaatg |
31905887 |
T |
|
| Q |
444 |
ttcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaaca |
543 |
Q |
| |
|
| | ||||||||| | ||||| ||||| | ||||||||||||| ||||||| |||| ||||||| ||| | ||| ||||||||||||| ||||| |
|
|
| T |
31905888 |
tgagagaaaattcaaataaacacgggttacaacatctccaaaagattcttctttcagaaacccttggagaaaagaaaattaagttaacaagtgtcaaaca |
31905987 |
T |
|
| Q |
544 |
aggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
|||||||||| ||||| | || || |||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
31905988 |
aggaatttcaataataaagcacagactccaacaaaaaaaggttcttttgattctagatgatgt |
31906050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 344 - 606
Target Start/End: Original strand, 35984033 - 35984295
Alignment:
| Q |
344 |
gggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaaca |
443 |
Q |
| |
|
|||||||||||||| || || || ||||||||||| |||| ||| | || ||||||||||||| | |||||| ||| ||| |||||||||||| |
|
|
| T |
35984033 |
gggatccatggaatcggcgggataggtaaaacaacacttgatctggctgtttataatttgattgcagacagctttgaaggtttatgttttcttgaaaacg |
35984132 |
T |
|
| Q |
444 |
ttcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaaca |
543 |
Q |
| |
|
| | ||||||||||| ||||| ||||| | ||||||||||||| |||| || |||| | ||||||||||| | ||| ||||||||| ||| ||||| |
|
|
| T |
35984133 |
tgagagaaaattcagacaaacacgggttacaacatctccaaaagattcttctctcagaaacacttggagagaagaaaattaagttaacaaatgtcaaaca |
35984232 |
T |
|
| Q |
544 |
aggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
|||||||||||| ||| | || || |||| | |||| || ||||||||| ||||||||||||| |
|
|
| T |
35984233 |
aggaatttcagtgataaagcatagactccagcaaaaaaaagttcttttgattctagatgatgt |
35984295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 4e-62; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 168 - 704
Target Start/End: Original strand, 29468676 - 29469212
Alignment:
| Q |
168 |
ttattgggtagggatggatatgagcatcagtttattgggaa-atagttgaacaagtctcaagagagattaagcctcttgctatacctgttgttgaatata |
266 |
Q |
| |
|
|||||||| ||||||| |||||| ||| ||||||||||| |||||||||||||||||||| ||||||| ||| | || |||||||| ||| ||| |
|
|
| T |
29468676 |
ttattgggcagggatgaatatgaacatgtttttattgggaagatagttgaacaagtctcaagggagattatacctgctactttacctgttcctgattatc |
29468775 |
T |
|
| Q |
267 |
gagttggactggagccccaaaggaaaaatgtactttcacttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggtggaat |
366 |
Q |
| |
|
||||||||| ||| ||||| | | ||||| || |||||||||| ||| | |||| | ||| | ||||||||||||||| ||||||||||| |
|
|
| T |
29468776 |
tagttggactcgagtaccaaaagcagcatgtaacatcccttttgaatgatgggcctaatgataaagtccaaatggtagggatccatgggattggtggaat |
29468875 |
T |
|
| Q |
367 |
tggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattcgggaaaattcagagaaacat |
466 |
Q |
| |
|
|| ||||| || ||||| || | ||| ||||||| ||||||||||||||| || |||| || ||||||||||| || | ||||||||||| ||| || |
|
|
| T |
29468876 |
agggaaaactacccttgccctggcagtttataattccattgtccatcaatttcaaggttcctgttttcttgaaaaagttagagaaaattcagacaaaaat |
29468975 |
T |
|
| Q |
467 |
gggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaaa |
566 |
Q |
| |
|
||||||| | |||||||||||||| |||| || || | ||||||| ||| | ||||||||||||||||||| ||||||||||||| || ||||| ||| |
|
|
| T |
29468976 |
gggttgatacatctccaaaagatccttctatctcaagttgttggagaaaagaacattgagttaacaagtgttagacaaggaatttcaatattacaaaaaa |
29469075 |
T |
|
| Q |
567 |
ggctccggaaaaagaaggttcttttgcttctagatgatgtcgacgagcagaaacaattggatgcaattgctggaggaaatgattggtatggtctcggcag |
666 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||| ||| || || | ||||| || || ||||||||| || |||||||| ||||| ||||| |
|
|
| T |
29469076 |
ggttccaccaaaagaaggttcttttgcttctagacgatgttgacaaggaggagcaattagaggctattgctggaagatctgattggtttggtcgtggcag |
29469175 |
T |
|
| Q |
667 |
tagagtcatcatcacaacccggggacaaagggttgcta |
704 |
Q |
| |
|
||||||||||||||| || | |||||||| |||||||| |
|
|
| T |
29469176 |
tagagtcatcatcaccactc-gggacaaaaggttgcta |
29469212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 167 - 606
Target Start/End: Complemental strand, 28491182 - 28490742
Alignment:
| Q |
167 |
cttattgggtagggatggatatgagcatcagtttattgggaa-atagttgaacaagtctcaagagagattaagcctcttgctatacctgttgttgaatat |
265 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||||||||| || ||||||||||||| |||| | || || || |||| ||||| ||| ||| || |
|
|
| T |
28491182 |
cttattggatagggatgggtatgagcacgagtttattgggaagattgttgaacaagtcttaagaaatataaaacccgttgccttacctattggtgactac |
28491083 |
T |
|
| Q |
266 |
agagttggactggagccccaaaggaaaaatgtactttcacttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggtggaa |
365 |
Q |
| |
|
|||||||||||||| ||||| | || | || |||||||||||||||||| | |||||| | | | ||||||||||||||| |||||||||| |
|
|
| T |
28491082 |
ctagttggactggagcaccaaaagcaacacgtgacttcacttttgaatgttggatctgatgatgcaatccatatggtagggatccatgggattggtggaa |
28490983 |
T |
|
| Q |
366 |
ttggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattcgggaaaattcagagaaaca |
465 |
Q |
| |
|
| || ||||| ||||||||||||||||| ||||| | |||||| ||||||| || |||| || ||||||||||| | | ||||||||||| ||| | |
|
|
| T |
28490982 |
tagggaaaactactcttgctctagaagtttataactctattgtctgtcaatttcaaggttcctgttttcttgaaaaagtaagagaaaattcagacaaaaa |
28490883 |
T |
|
| Q |
466 |
tgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaa |
565 |
Q |
| |
|
|||||||| |||||||||||||||| || | || |||| ||||||||||| | |||||||||||||||||| |||||||||||| | ||| |||| |
|
|
| T |
28490882 |
tgggttgatatatctccaaaagatccttttgtctcaaatttttggagagaagaacattgagttaacaagtgttggacaaggaatttccatgttacgacaa |
28490783 |
T |
|
| Q |
566 |
aggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
28490782 |
aggctccaccaaaagaagattcttttgcttctagatgatgt |
28490742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 167 - 606
Target Start/End: Complemental strand, 29803592 - 29803152
Alignment:
| Q |
167 |
cttattgggtagggatggatatgagcatcagtttattgggaa-atagttgaacaagtctcaagagagattaagcctcttgctatacctgttgttgaatat |
265 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||||||||| || ||||||||||||| |||| | || || || |||| ||||| ||| ||| || |
|
|
| T |
29803592 |
cttattggatagggatgggtatgagcacgagtttattgggaagattgttgaacaagtcttaagaaatataaaacccgttgccttacctattggtgactac |
29803493 |
T |
|
| Q |
266 |
agagttggactggagccccaaaggaaaaatgtactttcacttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggtggaa |
365 |
Q |
| |
|
|||||||||||||| ||||| | || | || |||||||||||||||||| | |||||| | | | ||||||||||||||| |||||||||| |
|
|
| T |
29803492 |
ctagttggactggagcaccaaaagcaacacgtgacttcacttttgaatgttggatctgatgatgcaatccatatggtagggatccatgggattggtggaa |
29803393 |
T |
|
| Q |
366 |
ttggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattcgggaaaattcagagaaaca |
465 |
Q |
| |
|
| || ||||| ||||||||||||||||| ||||| | |||||| ||||||| || |||| || ||||||||||| | | ||||||||||| ||| | |
|
|
| T |
29803392 |
tagggaaaactactcttgctctagaagtttataactctattgtctgtcaatttcaaggttcctgttttcttgaaaaagtaagagaaaattcagacaaaaa |
29803293 |
T |
|
| Q |
466 |
tgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaa |
565 |
Q |
| |
|
|||||||| |||||||||||||||| || | || |||| ||||||||||| | |||||||||||||||||| |||||||||||| | ||| |||| |
|
|
| T |
29803292 |
tgggttgatatatctccaaaagatccttttgtctcaaatttttggagagaagaacattgagttaacaagtgttggacaaggaatttccatgttacgacaa |
29803193 |
T |
|
| Q |
566 |
aggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29803192 |
aggctccaccaaaagaagattcttttgcttctagatgatgt |
29803152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 337 - 606
Target Start/End: Complemental strand, 29674551 - 29674282
Alignment:
| Q |
337 |
caaggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttctt |
436 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| || ||||| ||||||||||||||||| ||||||| |||||| |||||||||| |||| || |||||| |
|
|
| T |
29674551 |
caaggtagggattcttgggattggtggaatagggaaaaccactcttgctctagaagtttataattcaattgtcagtcaatttgaatgttcctgttttctt |
29674452 |
T |
|
| Q |
437 |
gaaaacattcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtg |
536 |
Q |
| |
|
||||| || | |||||||| || ||| ||||||||| |||||||||||||||| |||| || | || ||||||||||| | | ||| ||||||||| |
|
|
| T |
29674451 |
gaaaaagttagagaaaattctgacaaaaatgggttgatatatctccaaaagatccttctatctcatatttttggagagaagaacacagagataacaagtg |
29674352 |
T |
|
| Q |
537 |
ttaaacaaggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
|| | ||||||||||| || || || ||||||| | |||||||||||||||||||| |||| ||||| |
|
|
| T |
29674351 |
ttggagaaggaatttcaatactaaaaaaaaggcttccagaaaagaaggttcttttgcttttagacgatgt |
29674282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 344 - 606
Target Start/End: Complemental strand, 29695927 - 29695668
Alignment:
| Q |
344 |
gggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaaca |
443 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||||||||||| || |||| || ||| ||||||| | |
|
|
| T |
29695927 |
gggatccatgggattggtggaatagggaaaactactcttgctctagaagtttataattcgattgtccatcaatttcaatgttcctgtttttttgaaaa-a |
29695829 |
T |
|
| Q |
444 |
ttcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaaca |
543 |
Q |
| |
|
|| || | || | || || |||||||| |||||||||||||||| |||| || |||| ||||||||| | | || ||| |||| ||||||| ||| |
|
|
| T |
29695828 |
gtc-agagacttta-aggaaagtgggttgatatatctccaaaagatccttctgtctcaaattgttggagagacgaacatggagataaccagtgttagaca |
29695731 |
T |
|
| Q |
544 |
aggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatgt |
606 |
Q |
| |
|
|||| ||||| || ||||||||||||| | |||||||||||||||| ||||| |||||||| |
|
|
| T |
29695730 |
aggagtttcaatattacaacaaaggcttcaccaaaagaaggttcttttacttctggatgatgt |
29695668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 167 - 704
Target Start/End: Complemental strand, 29792543 - 29792009
Alignment:
| Q |
167 |
cttattgggtagggatggatatgagcatcagtttattgggaa-atagttgaacaagtctcaagagagattaagcctcttgctatacctgttgttgaatat |
265 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||||||| ||| || ||||||||||||| |||| | || || ||| ||| ||||||||| ||| || |
|
|
| T |
29792543 |
cttattggatagggataagtatgagtacgagtttattgagaatattgttgaacaagtcttaagaaatataaaacctattgtcttacctgttggtgattac |
29792444 |
T |
|
| Q |
266 |
agagttggactggagccccaaaggaaaaatgtactttcacttttgaatgttggttgtgatgacagagttgccaaggtagggatccatggaattggtggaa |
365 |
Q |
| |
|
||||||||| |||| ||||| | || |||| ||| |||||||||||||| | |||||| | | | || ||| ||||||||||| |||||||||| |
|
|
| T |
29792443 |
ctagttggactagagcaccaaaagcaacatgtgacttcgcttttgaatgttgggtctgatgatacaatccacatggtcgggatccatgggattggtggaa |
29792344 |
T |
|
| Q |
366 |
ttggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattcgggaaaattcagagaaaca |
465 |
Q |
| |
|
| || ||||| ||||||||||||||||| ||||||| |||||||| |||||||||| |||| || ||| ||||||| | || || | || | || || |
|
|
| T |
29792343 |
taggaaaaactactcttgctctagaagtttataattcgattgtccgtcaatttgaatgttcctgtttttttgaaaa-agtc-agagacttta-aggaaag |
29792247 |
T |
|
| Q |
466 |
tgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatacaacaa |
565 |
Q |
| |
|
|||||||| |||||||||||||||| |||| || |||| ||||||||| | || ||| |||||||||||| ||| ||| |||| || |||||||| |
|
|
| T |
29792246 |
tgggttgatatatctccaaaagatccttctgtctcaaattgttggagagacaaaaatggagataacaagtgttagacagggagtttcgatattacaacaa |
29792147 |
T |
|
| Q |
566 |
aggctccggaaaaagaaggttcttttgcttctagatgatgtcgacgagcagaaacaattggatgcaattgctggaggaaatgattggtatggtctcggca |
665 |
Q |
| |
|
||||| | |||||||||||||||| ||||| |||||||| ||| || | | ||||| | || ||||||||| | ||||||| |||||| || | |
|
|
| T |
29792146 |
aggcttcaccaaaagaaggttcttttacttctggatgatgttgacaaggatgagcaattaaaggctattgctggaagttccgattggtttggtctaggaa |
29792047 |
T |
|
| Q |
666 |
gtagagtcatcatcacaacccggggacaaagggttgcta |
704 |
Q |
| |
|
|||||||||||||||| || | |||||||| |||||||| |
|
|
| T |
29792046 |
gtagagtcatcatcacgactc-gggacaaaaggttgcta |
29792009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 344 - 704
Target Start/End: Complemental strand, 28479910 - 28479554
Alignment:
| Q |
344 |
gggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaaca |
443 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||| |||||||||| |||| || ||| ||||||| | |
|
|
| T |
28479910 |
gggatccatgggattggtggaataggaaaaactactcttgctctagaagtttataattcgattgtccgtcaatttgaatgttcctgtttttttgaaaa-a |
28479812 |
T |
|
| Q |
444 |
ttcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaaca |
543 |
Q |
| |
|
|| || | || | || || |||||||| |||||||||||||||| |||| || |||| ||||||||| | || ||| |||||||||||| ||| |
|
|
| T |
28479811 |
gtc-agagacttta-aggaaagtgggttgatatatctccaaaagatccttctgtctcaaattgttggagagacaaaaatggagataacaagtgttagaca |
28479714 |
T |
|
| Q |
544 |
aggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatgtcgacgagcagaaacaattggatgcaattgctggagga |
643 |
Q |
| |
|
||| |||| || ||||||||||||| | |||||||||||||||| ||||| |||||||| ||| || | | ||||| | || ||||||||| | |
|
|
| T |
28479713 |
gggagtttcgatattacaacaaaggcttcaccaaaagaaggttcttttacttctggatgatgttgacaaggatgagcaattaaaggctattgctggaagt |
28479614 |
T |
|
| Q |
644 |
aatgattggtatggtctcggcagtagagtcatcatcacaacccggggacaaagggttgcta |
704 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||| || | |||||||| |||||||| |
|
|
| T |
28479613 |
tccgattggtttggtctaggaagtagagtcatcatcacgactc-gggacaaaaggttgcta |
28479554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 340 - 498
Target Start/End: Complemental strand, 29759913 - 29759755
Alignment:
| Q |
340 |
ggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaa |
439 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||||||||||||| || ||||||||||||| |||| ||||||| |||||| ||||||||| |
|
|
| T |
29759913 |
ggtagggatccatgggatgggtggaattgggaaaacaactcttgctctatctgtttataatttgattgcccatgaatttgatgcttcatgttttcttgaa |
29759814 |
T |
|
| Q |
440 |
aacattcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttc |
498 |
Q |
| |
|
|| || |||||||| || ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
29759813 |
aatgttagggaaaatcatgaaaaacatgggttaccatatctccaaaacatcattctttc |
29759755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 513
Target Start/End: Original strand, 28901339 - 28901505
Alignment:
| Q |
347 |
atccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattc |
446 |
Q |
| |
|
||||| |||| ||||||||| || |||||||||||| |||| | ||| ||||||| |||||| |||||||||| |||| || | ||||||| | | |
|
|
| T |
28901339 |
atccacggaactggtggaatagggaaaacaactctttctcttgcagtttataattcaattgtcgatcaatttgatggttcttgttatcttgaagatgtaa |
28901438 |
T |
|
| Q |
447 |
gggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggaga |
513 |
Q |
| |
|
| | |||| ||||||||||||||||| | |||||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
28901439 |
gaggaaataaagagaaacatgggttgatacatctccaaaatatccttctttctaaaatatttggaga |
28901505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 498
Target Start/End: Complemental strand, 29728417 - 29728259
Alignment:
| Q |
340 |
ggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaa |
439 |
Q |
| |
|
|||||||||| | || ||||||||||| || ||||||||||||||| | || ||||||||||||| | || ||||||| |||||| ||| ||||| |
|
|
| T |
29728417 |
ggtagggatctacgggattggtggaatagggaaaacaactcttgctatttctgtttataatttgattgccaatgaatttgaggtttcatgttttgttgaa |
29728318 |
T |
|
| Q |
440 |
aacattcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttc |
498 |
Q |
| |
|
|| || | |||| | || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29728317 |
aatgttagagaaagtcatgaaaaacatgggttaccatatctccaaaagatcattctttc |
29728259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 26937762 - 26937847
Alignment:
| Q |
340 |
ggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagtt |
425 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||| |||| ||||| | || | | ||||||||||||| ||||||||||||||| |
|
|
| T |
26937762 |
ggtagggatctatgggattggcggaattggtaaatcaacacttgcacgagcaatttataatttgattggtgatcaatttgaaagtt |
26937847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 29724798 - 29724731
Alignment:
| Q |
340 |
ggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattg |
407 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||| |||||||| || || |||||||||||||||| |
|
|
| T |
29724798 |
ggtagggatccatgggattggtggaatagggaaagcaactcttactttatctgtctataatttgattg |
29724731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 344 - 704
Target Start/End: Original strand, 614434 - 614793
Alignment:
| Q |
344 |
gggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaaca |
443 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||| ||||||||||| ||||| ||||||| |||||| ||||||||| || |||| || ||| ||||||| |
|
|
| T |
614434 |
gggatccttgggattggtggaatagggaaaactactcttgctctggaagtttataattcgattgttcatcaatttcaatgttcctgttttgttgaaaaag |
614533 |
T |
|
| Q |
444 |
ttcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggagagaaggagattgagttaacaagtgttaaaca |
543 |
Q |
| |
|
| | |||||||| || ||| ||||||||| | |||||||||||||| || | || |||| ||||||||||| | | ||| ||||||||||| ||| |
|
|
| T |
614534 |
tcagagaaaattctgacaaaaatgggttgatacatctccaaaagatccttttgtctcaaattgttggagagaagaacacagagataacaagtgttggaca |
614633 |
T |
|
| Q |
544 |
aggaatttcagtaatacaacaaaggctccggaaaaagaaggttcttttgcttctagatgatgtcgacgagcagaaacaattggatgcaattgctggagga |
643 |
Q |
| |
|
|||||||| | || ||||| ||||||| | ||||||||||||||||||||||||| ||||| ||| | || | |||||| | || ||||||||| | |
|
|
| T |
614634 |
aggaattttaatattacaaaaaaggcttcaacaaaagaaggttcttttgcttctagacgatgttgacaaagaggagcaattgaaggctattgctggaagt |
614733 |
T |
|
| Q |
644 |
aatgattggtatggtctcggcagtagagtcatcatcacaacccggggacaaagggttgcta |
704 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| || | |||||||| |||||||| |
|
|
| T |
614734 |
tccgattggtttggtccaggcagtagagtcatcatcacgactc-gggacaaaaggttgcta |
614793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 340 - 498
Target Start/End: Complemental strand, 239283 - 239125
Alignment:
| Q |
340 |
ggtagggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaa |
439 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||||||||| ||| || |||||||||||| |||||| |||||| |||||| ||| ||||| |
|
|
| T |
239283 |
ggtagggatccatgggattggtggaataggaaaaacaactcttgctttagccgtttataatttgatttcccatcagtttgaagtttcatgttttattgaa |
239184 |
T |
|
| Q |
440 |
aacattcgggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttc |
498 |
Q |
| |
|
|| | | |||||||| |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
239183 |
aatgtgagagaaaattctaagaaacatgggttgacatatctccaaaaaatcattatttc |
239125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 347 - 498
Target Start/End: Complemental strand, 212584 - 212433
Alignment:
| Q |
347 |
atccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattc |
446 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||| || || ||||||||||||| |||||||||||| |||||| ||||||||||| || |
|
|
| T |
212584 |
atccatgggattggtggaatagggaaaacaactcttgctatatctgtgtataatttgattgcccatcaatttgatgtttcatgttttcttgaaaatgtta |
212485 |
T |
|
| Q |
447 |
gggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttc |
498 |
Q |
| |
|
| |||||| || ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
212484 |
gagaaaatcatgaaaaacatgggttaccatatctccaaaaaatcattctttc |
212433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 513
Target Start/End: Complemental strand, 8455 - 8289
Alignment:
| Q |
347 |
atccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattc |
446 |
Q |
| |
|
||||| |||| ||||||||| || |||||||||||| |||| | ||| ||||||| |||||| |||||||||| |||| || | ||||||| | | |
|
|
| T |
8455 |
atccacggaactggtggaatagggaaaacaactctttctcttgcagtttataattcaattgtcgatcaatttgatggttcttgttatcttgaagatgtaa |
8356 |
T |
|
| Q |
447 |
gggaaaattcagagaaacatgggttgacatatctccaaaagatcattctttcggaaataattggaga |
513 |
Q |
| |
|
| | |||| ||||||||||||||||| | |||||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
8355 |
gaggaaataaagagaaacatgggttgatacatctccaaaatatccttctttctaaaatatttggaga |
8289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 16691604 - 16691681
Alignment:
| Q |
344 |
gggatccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaa |
421 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||| || | | ||||||||||||| ||||||||||| |
|
|
| T |
16691604 |
gggatccatggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaa |
16691681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 19044972 - 19044927
Alignment:
| Q |
345 |
ggatccatggaattggtggaattggtaaaacaactcttgctctaga |
390 |
Q |
| |
|
||||| |||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
19044972 |
ggatcaatggaattggtggaataggtaaaataaatcttgctctaga |
19044927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 67047 - 67120
Alignment:
| Q |
347 |
atccatggaattggtggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttga |
420 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||| || || ||||||| ||||| |||||||||| |
|
|
| T |
67047 |
atccatggaatcggtggaatagggaaaacaactcttgctcaagcggtttataattcaattgtagatcaatttga |
67120 |
T |
|
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