View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5032-Insertion-5 (Length: 753)

Name: NF5032-Insertion-5
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5032-Insertion-5
NF5032-Insertion-5
[»] chr1 (5 HSPs)
chr1 (309-654)||(3144156-3144501)
chr1 (114-259)||(3144550-3144694)
chr1 (706-748)||(21444802-21444844)
chr1 (705-750)||(22103828-22103873)
chr1 (647-746)||(42267304-42267405)
[»] chr2 (4 HSPs)
chr2 (649-750)||(11689544-11689647)
chr2 (649-750)||(11721412-11721515)
chr2 (698-748)||(11689762-11689812)
chr2 (698-748)||(11721247-11721297)
[»] chr4 (4 HSPs)
chr4 (698-753)||(7280425-7280480)
chr4 (647-748)||(11857893-11857996)
chr4 (698-748)||(7280263-7280313)
chr4 (706-748)||(11858113-11858155)
[»] chr8 (2 HSPs)
chr8 (647-748)||(11291028-11291131)
chr8 (649-748)||(22890101-22890201)
[»] scaffold0181 (1 HSPs)
scaffold0181 (706-748)||(9427-9469)
[»] chr3 (2 HSPs)
chr3 (706-750)||(30380908-30380952)
chr3 (698-748)||(14633906-14633956)
[»] chr6 (2 HSPs)
chr6 (705-748)||(33648629-33648672)
chr6 (706-748)||(1215069-1215111)
[»] scaffold0100 (1 HSPs)
scaffold0100 (706-748)||(31082-31124)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 309 - 654
Target Start/End: Complemental strand, 3144501 - 3144156
Alignment:
Q  309 cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc 408  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144501 cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc 3144402  T
Q  409 cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc 508  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144401 cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc 3144302  T
Q  509 tgctgtttctttctttctattctctattctgagccaaacacactttctctgccaacttaatcatgatcgttcccaccctctgacgcctttgtcgatcaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144301 tgctgtttctttctttctattctctattctgagccaaacacactttctctgccaacttaatcatgatcgttcccaccctctgacgcctttgtcgatcaat 3144202  T
Q  609 acatacatagatacaactacaaatatacattgtatactgcttttat 654  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||||    
T  3144201 acatacatgtatacaactacaaatatacattctatactgcttttat 3144156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 114 - 259
Target Start/End: Complemental strand, 3144694 - 3144550
Alignment:
Q  114 taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcannnnnnnnnnnnnnnnnncttgaaaaccaaacaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||    
T  3144694 taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttca-tttttgtttctttttttcttgaaaaccaaacaaa 3144596  T
Q  214 gaaagtagggtcacgtatgttgagaagtaagacagtgaaagaaagc 259  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  3144595 gaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc 3144550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 748
Target Start/End: Complemental strand, 21444844 - 21444802
Alignment:
Q  706 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  21444844 ttaatcctggcattttgccgtgtcaaaatttaatcacttaaaa 21444802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 750
Target Start/End: Complemental strand, 22103873 - 22103828
Alignment:
Q  705 tttaatcctggcattttgtcatgtcaaaatttaatcacttaaaatt 750  Q
    ||||||||||  |||||| | |||||||||||||||||||||||||    
T  22103873 tttaatcctgctattttgccctgtcaaaatttaatcacttaaaatt 22103828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 746
Target Start/End: Original strand, 42267304 - 42267405
Alignment:
Q  647 gcttttatacgtgtttagtccctaaaactagaggtcatttaaaa-ttgatcg-tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcactt 744  Q
    ||||||||| ||||||| |||||  || ||| |||||||||||| ||| ||  |||| |||||||||||| || |||||| || ||||||||||||| ||    
T  42267304 gcttttatatgtgtttattccctgcaaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatcattt 42267403  T
Q  745 aa 746  Q
    ||    
T  42267404 aa 42267405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 649 - 750
Target Start/End: Original strand, 11689544 - 11689647
Alignment:
Q  649 ttttatacgtgtttagtccctaaaactagaggtcatttaaaa-ttgatcg-tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaa 746  Q
    ||||||| ||||||||||| |  || ||| |||||||||||| ||||||  |||| |||||||||| ||||||||||| || ||||||||||||||||||    
T  11689544 ttttatatgtgtttagtccttggaaataggggtcatttaaaaattgatccctgtattctttaatcccggcattttgtcctgccaaaatttaatcacttaa 11689643  T
Q  747 aatt 750  Q
    ||||    
T  11689644 aatt 11689647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 750
Target Start/End: Complemental strand, 11721515 - 11721412
Alignment:
Q  649 ttttatacgtgtttagtccctaaaactagaggtcatttaaaa-ttgatcg-tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaa 746  Q
    ||||||| ||||||||||  |  || ||| |||||||||||| ||||||  |||| |||||||||||| |||||| || || ||||||||||||||||||    
T  11721515 ttttatatgtgtttagtctttggaaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcacttaa 11721416  T
Q  747 aatt 750  Q
    ||||    
T  11721415 aatt 11721412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 748
Target Start/End: Complemental strand, 11689812 - 11689762
Alignment:
Q  698 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    |||| ||||||||||| ||| |||||| || ||||||||||||||||||||    
T  11689812 tgtattctttaatcctagcaatttgtcctgccaaaatttaatcacttaaaa 11689762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 748
Target Start/End: Original strand, 11721247 - 11721297
Alignment:
Q  698 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    |||| ||||||||||| |||||||| | || ||||||||||||||||||||    
T  11721247 tgtattctttaatcctagcattttgccctgccaaaatttaatcacttaaaa 11721297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 698 - 753
Target Start/End: Complemental strand, 7280480 - 7280425
Alignment:
Q  698 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaattatg 753  Q
    |||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  7280480 tgtattctttaattctgacattttgccatgtcaaaatttaatcacttaaaattatg 7280425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 748
Target Start/End: Original strand, 11857893 - 11857996
Alignment:
Q  647 gcttttatacgtgtttagtccctaaaactagaggtcatttaaaa--ttgatcgtgtaatctttaatcctggcattttgtcatgtcaaaatttaatcactt 744  Q
    ||||||||| |||||||||||||  || ||||||||||||||||  | |  | |||| || |||||||||||||||||   || ||||||||||||||||    
T  11857893 gcttttatatgtgtttagtccctgcaaatagaggtcatttaaaaaatggtccctgtattccttaatcctggcattttgctctgccaaaatttaatcactt 11857992  T
Q  745 aaaa 748  Q
    ||||    
T  11857993 aaaa 11857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 698 - 748
Target Start/End: Original strand, 7280263 - 7280313
Alignment:
Q  698 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    |||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  7280263 tgtattctttaatcctgtcattttgccctgtcaaaatttaatcacttaaaa 7280313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 706 - 748
Target Start/End: Complemental strand, 11858155 - 11858113
Alignment:
Q  706 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    ||||||||||||||||  | |||||||||||||||||||||||    
T  11858155 ttaatcctggcattttaccctgtcaaaatttaatcacttaaaa 11858113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 748
Target Start/End: Original strand, 11291028 - 11291131
Alignment:
Q  647 gcttttatacgtgtttagtccctaaaactagaggtcatttaaaa--ttgatcgtgtaatctttaatcctggcattttgtcatgtcaaaatttaatcactt 744  Q
    ||||||||||||||||||| |||| || |||  |||||||||||  | | || |||| || |||||||||  |||||| |||| ||||||||||||||||    
T  11291028 gcttttatacgtgtttagttcctacaaataggagtcatttaaaaaatggttcttgtattccttaatcctgatattttgccatgccaaaatttaatcactt 11291127  T
Q  745 aaaa 748  Q
    ||||    
T  11291128 aaaa 11291131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 748
Target Start/End: Original strand, 22890101 - 22890201
Alignment:
Q  649 ttttatacgtgtttagtccctaaaactagaggtcatttaaaat-tgatcgtgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaa 747  Q
    ||||||| ||||||||||||   || ||| ||||||||||||  || || |||| || |||||| || |||||||||  |||||||||||||||||||||    
T  22890101 ttttatatgtgtttagtcccggtaaataggggtcatttaaaaaatggtcttgtattccttaatcatgacattttgtcccgtcaaaatttaatcacttaaa 22890200  T
Q  748 a 748  Q
    |    
T  22890201 a 22890201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 748
Target Start/End: Complemental strand, 9469 - 9427
Alignment:
Q  706 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  9469 ttaatcctggtattttgtcctgtcaaaatttaatcacttaaaa 9427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 706 - 750
Target Start/End: Original strand, 30380908 - 30380952
Alignment:
Q  706 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaatt 750  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||    
T  30380908 ttaatcctgatattttgtcatgtcaaaatttaatcatttaaaatt 30380952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 748
Target Start/End: Original strand, 14633906 - 14633956
Alignment:
Q  698 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    |||| |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  14633906 tgtattctttaatcctgacattttgtcctaccaaaatttaatcacttaaaa 14633956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 748
Target Start/End: Original strand, 33648629 - 33648672
Alignment:
Q  705 tttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||    
T  33648629 tttaatcatggtattttgtcatgtgaaaatttaatcacttaaaa 33648672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 706 - 748
Target Start/End: Original strand, 1215069 - 1215111
Alignment:
Q  706 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  1215069 ttaatcctgacattttgccctgtcaaaatttaatcacttaaaa 1215111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 706 - 748
Target Start/End: Original strand, 31082 - 31124
Alignment:
Q  706 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 748  Q
    ||||| |||||| |||||| |||||||||||||||||||||||    
T  31082 ttaattctggcaatttgtcctgtcaaaatttaatcacttaaaa 31124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University