View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5032-Insertion-6 (Length: 695)
Name: NF5032-Insertion-6
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 397 - 661
Target Start/End: Original strand, 8148115 - 8148380
Alignment:
| Q |
397 |
aaataatacattaattgtattatatatggaagggccgataacattctagtacataacgacgccattttctaatgagttaaaaataataagctgtgacaaa |
496 |
Q |
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| T |
8148115 |
aaataatacattaattgtattatatatggaagggccgataacattctagtacataacgacgccattttctaatgagttaaaaataataagctgtgacaaa |
8148214 |
T |
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| Q |
497 |
ggaa--------acacatagcacaaaggagtatacggttgttagcaaaaaagaaaggagtatacggttaaaattaagatgtgacaattacctccaagaaa |
588 |
Q |
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| T |
8148215 |
ggaataacaaatacacatagcacaaaggagtatacggttgttagcaaaaaagaaaggagtatacgattaaaattaagatgtgacaattacccccaaaaaa |
8148314 |
T |
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| Q |
589 |
agtacaagagcataatttattttcattaataatcgatgaacgatgatcatacattgctccgtgtaaaacaaaa |
661 |
Q |
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| T |
8148315 |
agtacaagagcataatttattttcattaataat-------tgatgatcatacattgctccgtctaaaacaaaa |
8148380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 8142391 - 8142672
Alignment:
| Q |
8 |
cattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgtt |
107 |
Q |
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| T |
8142391 |
cattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgta |
8142490 |
T |
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| Q |
108 |
acttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtat------------atggatattgttgatgatg |
192 |
Q |
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| T |
8142491 |
acttgaatctataggcatatgtaatacaaattgcatctttttttggtgaagatacttgacatttggtataaagataaattgatggatatt-ttgatgatg |
8142589 |
T |
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| Q |
193 |
tgtattttagtgtcatatatagatctgaaggtgggttgtttgtatatatgtagaatttttattttagaaaggtttctgttggtttca |
279 |
Q |
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| T |
8142590 |
tgtgttttagtgtc----atagatctgaaggtgggttgtttgtatatatgtagaatttttattttggaaaggtttctgttggtttca |
8142672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 7498287 - 7498004
Alignment:
| Q |
8 |
cattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgtt |
107 |
Q |
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| T |
7498287 |
cattttgcatcaaatcgtcacaagtctctggctcatccttcacctcataatctcttccccaattcatatttgctgctttggaggctatgacaaatctgta |
7498188 |
T |
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| Q |
108 |
acttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtat------------atggatattgttgatgatg |
192 |
Q |
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| T |
7498187 |
actttaatctataggtatatgtaattcaaattgcatctttttttggtcaagatacttggcatttggtataaggataaattgatggatactgttgatgatg |
7498088 |
T |
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| Q |
193 |
tgtattttagtgtcatatatagatctgaaggtgggttgtttgtatatatgtagaatttttattttagaaaggtttctgttggtt |
276 |
Q |
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| T |
7498087 |
tgtgttttagtgtcatatatagatctgaagtttggttgtttgtatatatgtagaatttttcttttggaaaggtttctattggtt |
7498004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 7501074 - 7500797
Alignment:
| Q |
9 |
attttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgtta |
108 |
Q |
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| T |
7501074 |
attttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctatggcaaatctgtaa |
7500975 |
T |
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| Q |
109 |
cttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtat------------atggatattgttgatgatgt |
193 |
Q |
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| T |
7500974 |
cttgaatttataggcttatgtcatccaaattgcatctttttttggtgaagatacttgtcgtttgatataaggataagttgatggatattgttgatgatat |
7500875 |
T |
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| Q |
194 |
gtattttagtgtcatatatagatctgaaggtgggttgtttgtatatatgtagaatttttattttagaaaggtttctgttggtt |
276 |
Q |
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| T |
7500874 |
-tttttcagtgtc----attgatctgaaagtgggttgtttgtatatatgtagaactttgcttttggaaaggtttctgctggtt |
7500797 |
T |
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