View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5032-Insertion-7 (Length: 658)

Name: NF5032-Insertion-7
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5032-Insertion-7
NF5032-Insertion-7
[»] chr4 (10 HSPs)
chr4 (232-623)||(43008306-43008691)
chr4 (8-103)||(43008165-43008259)
chr4 (146-292)||(33648197-33648344)
chr4 (167-289)||(684154-684276)
chr4 (200-292)||(1845876-1845968)
chr4 (169-262)||(37182217-37182310)
chr4 (148-292)||(42747079-42747223)
chr4 (159-279)||(16962830-16962950)
chr4 (260-292)||(959089-959121)
chr4 (200-260)||(7095596-7095656)
[»] chr1 (7 HSPs)
chr1 (169-292)||(21322492-21322615)
chr1 (147-291)||(32815760-32815905)
chr1 (169-292)||(29855949-29856073)
chr1 (231-292)||(50899057-50899118)
chr1 (169-219)||(10608960-10609010)
chr1 (250-292)||(30871972-30872014)
chr1 (221-291)||(48729065-48729135)
[»] chr5 (5 HSPs)
chr5 (195-263)||(42158277-42158345)
chr5 (202-292)||(28228862-28228952)
chr5 (155-260)||(37442563-37442668)
chr5 (185-247)||(32303646-32303708)
chr5 (200-292)||(28217978-28218070)
[»] chr8 (7 HSPs)
chr8 (221-284)||(8983764-8983827)
chr8 (231-290)||(7913342-7913401)
chr8 (170-292)||(34072857-34072977)
chr8 (249-291)||(43562034-43562076)
chr8 (157-261)||(43846259-43846364)
chr8 (169-213)||(3434791-3434835)
chr8 (260-292)||(38006586-38006618)
[»] chr6 (1 HSPs)
chr6 (167-290)||(3644753-3644876)
[»] chr3 (4 HSPs)
chr3 (185-292)||(40355900-40356007)
chr3 (147-244)||(35310401-35310499)
chr3 (170-292)||(20991575-20991697)
chr3 (250-292)||(32535579-32535621)
[»] chr7 (3 HSPs)
chr7 (145-292)||(31756779-31756929)
chr7 (169-243)||(3756397-3756471)
chr7 (261-292)||(31756888-31756919)
[»] chr2 (2 HSPs)
chr2 (169-289)||(6620025-6620143)
chr2 (261-292)||(8514054-8514085)
[»] scaffold0004 (1 HSPs)
scaffold0004 (169-244)||(130712-130787)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 232 - 623
Target Start/End: Original strand, 43008306 - 43008691
Alignment:
Q  232 tgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagaggaatcctttaaaattttgtgagaaaaagatagtgcaaac 331  Q
    ||||| |||||||| | ||| |||| |  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  43008306 tgagtaaactcacacagatgcatttcttgacggaaatgagcaaaaacagatggtagaagaggaatcttttaaaattttgtgagaaaaagatagtgcaaac 43008405  T
Q  332 ttatctcttatttattattaaattaacaaacaatattggtnnnnnnncctaaccttgtaccaattgccaattggagtatctaatagctaagtgaaaactg 431  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43008406 ttatctcttatttattattaaattaacaaacaatattggtgggggggcctaaccttgtaccaattgccaattggagtatctaatagctaagtgaaaactg 43008505  T
Q  432 gcagaaaacaaggtgcatttagatctctacttacaaaactctataaaaggggaagtacttgtagttgtatggatatccaagcacaaaataccatctatag 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |      |||||||||||||||||||||| |||||||||||||    
T  43008506 gcagaaaacaaggtgcatttagatctctacttacaaaactctataaaaggggaagtcc------ttgtatggatatccaagcacaacataccatctatag 43008599  T
Q  532 ctagcatcttaaatttctaattttgtttcatttttcttcaaatcattcaaaagaacattatggtgtctaaagtagaagaagcaatgaagaag 623  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43008600 ctagcatcttaaatttctaattttgtttcattgttcttcaaatcattcaaaagaacattatggtgtctaaagtagaagaagcaatgaagaag 43008691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 43008165 - 43008259
Alignment:
Q  8 ataagtttggcgccctcgaaaaaattaagctttcaccactagctgctaactaatcttcacacctctaacaagttaaccattaacatttgcttataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  43008165 ataagtttggcgccctcgaaaaaattaagctttcaccactagctgctaactaatcttcacacctctaataagttaa-cattaacatttgcttataa 43008259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 146 - 292
Target Start/End: Original strand, 33648197 - 33648344
Alignment:
Q  146 tgagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcac 244  Q
    ||||||||  |||||| |||| |||||||| |||||||| ||||||||  |||||||||||||||| | ||| || ||||||||| |||||||||||  |    
T  33648197 tgagtaccgttcttctcccatatatttttgctcattcccgtcaaaatagtcgagtgtgagttaactaacgcagatgtattctcagcgtgagttaacttgc 33648296  T
Q  245 ataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
      |  ||||||||||| ||| |||||||||||| |||||| |||||||    
T  33648297 gcatgtgtatttttcagcggcaatgagcaaaaatagatggtagaagag 33648344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 167 - 289
Target Start/End: Complemental strand, 684276 - 684154
Alignment:
Q  167 tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaa 266  Q
    ||||||||||||||||| | ||||||  ||||  |||||||||||| ||| || ||||||||  |||| |||||||||||| |||||||| ||||| |||    
T  684276 tatttttgttcattcccgttaaaatagtcgagcatgagttaactcacgcagatgtattctcatcgtgaattaactcacatagatgtatttctcaacagaa 684177  T
Q  267 atgagcaaaaacagatgggagaa 289  Q
    |||| ||||| || ||| |||||    
T  684176 atgaacaaaagcatatgagagaa 684154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 1845876 - 1845968
Alignment:
Q  200 gtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||| |||||| | |||||| ||| |||||||||||||  |  ||||||| ||| | | ||||||||||||||| |||||||||||    
T  1845876 gtgagttaacttatgcatgtgtattctgagtatgagttaactcacgcatgtgtatttctcagcagcaatgagcaaaaacagttgggagaagag 1845968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 37182310 - 37182217
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaac 262  Q
    |||||| || |||||||||||||||||||| || ||||||||||  ||| |  ||| |||  |||||||||||||| ||  |||||||||||||    
T  37182310 tttttgctcgttcccatcaaaataaccgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgtatttttcaac 37182217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 42747079 - 42747223
Alignment:
Q  148 agtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacat 246  Q
    ||||| ||||||||||||| | |||||| | |||||| ||||||||   ||| ||  ||||||||| |||  | ||||||||| ||||||||||||||      
T  42747079 agtacgactcttcttccatctgtttttgctaattcccgtcaaaatagtagagcgtc-gttaactcacgcaggtgtattctcagcgtgagttaactcacgc 42747177  T
Q  247 aaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    |  ||||||| ||| || || ||||||||| |||||||||||||||    
T  42747178 atgtgtatttctcagcgaaagtgagcaaaaccagatgggagaagag 42747223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 16962830 - 16962950
Alignment:
Q  159 tcttccattatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtattttt 258  Q
    ||||||||  ||||| |||||||| |||||||||  |||| ||||||||||||| | | || |||| |||||||||||| ||| ||  | |||||||| |    
T  16962830 tcttccatagtttttattcattcctatcaaaatagtcgagcgtgagttaactcacgtagatgtattttcagtgtgagttgacttacgcatatgtatttct 16962929  T
Q  259 caacggaaatgagcaaaaaca 279  Q
    || | | ||||||| ||||||    
T  16962930 cagcaggaatgagccaaaaca 16962950  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 959121 - 959089
Alignment:
Q  260 aacggaaatgagcaaaaacagatgggagaagag 292  Q
    |||||||||||||||||| ||||||||||||||    
T  959121 aacggaaatgagcaaaaatagatgggagaagag 959089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 7095656 - 7095596
Alignment:
Q  200 gtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttca 260  Q
    ||||||||||||| |||  | |||| ||| ||| ||||||||||||||| |||||||||||    
T  7095656 gtgagttaactcacgcaagtgtattttcaatgtaagttaactcacataagtgtatttttca 7095596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 169 - 292
Target Start/End: Complemental strand, 21322615 - 21322492
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaat 268  Q
    |||||| ||| |||| |||||||| ||||| ||||||||||||| |||  | ||||||||  || |||||||||||  | |||||||| ||||||| |||    
T  21322615 tttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgcaggtgtattctcaacgtaagttaactcacgcagatgtatttctcaacgggaat 21322516  T
Q  269 gagcaaaaacagatgggagaagag 292  Q
    |||||||| |||||||||||||||    
T  21322515 gagcaaaaccagatgggagaagag 21322492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 32815905 - 32815760
Alignment:
Q  147 gagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcaca 245  Q
    ||||||||| |||||||||| | |||||| ||||| |  ||||||||| | |||||||| ||||||| |||||| |||||||   ||||||||||||||     
T  32815905 gagtaccacccttcttccatctgtttttgctcatttctgtcaaaataatctagtgtgagctaactcacgcatatgtattctcgacgtgagttaactcacg 32815806  T
Q  246 taaatgtatttttcaacggaaatgagcaaaaacagatgggagaaga 291  Q
     |  |||||||| ||  || ||||| ||||||||||||||||||||    
T  32815805 catgtgtattttccagtgggaatgaccaaaaacagatgggagaaga 32815760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 29855949 - 29856073
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttt-tcaacggaaa 267  Q
    |||||| |||||||||||||||||  |||| |||||||  |||| ||| || |||||||||   |||||||||||   |  |||||||| ||| ||||||    
T  29855949 tttttgctcattcccatcaaaatagtcgagcgtgagttgcctcaggcaaatgtattctcagcacgagttaactcatgcaggtgtattttctcagcggaaa 29856048  T
Q  268 tgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||||| |||||||||    
T  29856049 tgagcaaaaacagattggagaagag 29856073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 50899118 - 50899057
Alignment:
Q  231 gtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||||  |  ||||||| ||| |||||||||||||||||||||| ||||||||    
T  50899118 gtgagttaactcacgcatgtgtatttctcagcggaaatgagcaaaaacagatgagagaagag 50899057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 10609010 - 10608960
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatat 219  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||| ||||||    
T  10609010 tttttgttcgttcccgtcaaaataacagagcgtgagttaactcacgcatat 10608960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 30871972 - 30872014
Alignment:
Q  250 tgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||| |  ||||||||||||||||||||||||||    
T  30871972 tgtatttttcaactgggatgagcaaaaacagatgggagaagag 30872014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 48729065 - 48729135
Alignment:
Q  221 tattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaaga 291  Q
    |||| |||| ||||||||||||||  |  |||||||||||  ||||||||||||||| |||||| ||||||    
T  48729065 tattttcagcgtgagttaactcacgcatgtgtatttttcagtggaaatgagcaaaaatagatggaagaaga 48729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 42158277 - 42158345
Alignment:
Q  195 cgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacg 263  Q
    ||||||||||||| ||||||||| | |||| | | |||||||||||||| |||||||||||||||||||    
T  42158277 cgagtgtgagttatctcatgcatgtgtatttttaatgtgagttaactcaaataaatgtatttttcaacg 42158345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 28228862 - 28228952
Alignment:
Q  202 gagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||| |||| | ||||||||  ||||||||||| ||  |  ||||||| ||| |||| |||| |||||||||||||||||||||    
T  28228862 gagttaactcacgcatgtgtattctcatcgtgagttaacttacgcatgtgtatttctcagcggagatgaacaaaaacagatgggagaagag 28228952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 37442668 - 37442563
Alignment:
Q  155 ctcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgta 253  Q
    |||||||||||| | |||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||| |||   ||||||||||||| ||  ||||    
T  37442668 ctcttcttccatctgtttttgctcattcccgtcaaa-tagccgagcgtgagttaactcatgcagatgtattttcaacatgagttaactcacgtaggtgta 37442570  T
Q  254 tttttca 260  Q
    |||||||    
T  37442569 tttttca 37442563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 32303646 - 32303708
Alignment:
Q  185 tcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacata 247  Q
    ||||||||  |||| ||||||||||||| |||| | |||| |||| |||||||||||||||||    
T  32303646 tcaaaatagtcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacata 32303708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 28217978 - 28218070
Alignment:
Q  200 gtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||| |||  | ||||||||  ||||||||||| ||  |  ||||||| |||||||  ||||||||||||| |||| |||||||    
T  28217978 gtgagttaactcacgcaggtgtattctcatcgtgagttaacttacgcatgtgtatttctcaacggtgatgagcaaaaacatatggaagaagag 28218070  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 8983764 - 8983827
Alignment:
Q  221 tattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgg 284  Q
    ||||||||| |||||||||||||| ||||||||||| ||| ||| |||||||||||| ||||||    
T  8983764 tattctcagcgtgagttaactcacgtaaatgtatttctcagcgggaatgagcaaaaagagatgg 8983827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 7913342 - 7913401
Alignment:
Q  231 gtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaag 290  Q
    |||||||||| |||| |  ||||||| ||| ||||||||||||||||||||||| |||||    
T  7913342 gtgagttaacacacacatgtgtatttctcagcggaaatgagcaaaaacagatggaagaag 7913401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 34072977 - 34072857
Alignment:
Q  170 ttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatg 269  Q
    ||||| |||||||| | ||||||  ||||  |||||||||||| | |  | ||||||||| ||||||||||| ||  || ||||||||||| ||| || |    
T  34072977 ttttgctcattcccgttaaaataggcgagcatgagttaactcacgtaggtgtattctcagcgtgagttaacttacgcaagtgtatttttcagcgg-aacg 34072879  T
Q  270 agcaaaaacagatgggagaagag 292  Q
    |||||||| ||||||||||||||    
T  34072878 agcaaaaa-agatgggagaagag 34072857  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 43562034 - 43562076
Alignment:
Q  249 atgtatttttcaacggaaatgagcaaaaacagatgggagaaga 291  Q
    ||||||||||||||||| ||||||||||||||| | |||||||    
T  43562034 atgtatttttcaacggagatgagcaaaaacagacgagagaaga 43562076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 43846259 - 43846364
Alignment:
Q  157 cttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatt 255  Q
    |||||||||| | |||||||||| |||| | ||||||  |||| ||||||||||||| |||| | |||||||||   ||||||||||||  |  ||||||    
T  43846259 cttcttccatctgtttttgttcactcccgttaaaatagtcgagcgtgagttaactcacgcatgtatattctcagcaagagttaactcacgcaggtgtatt 43846358  T
Q  256 tttcaa 261  Q
    ||||||    
T  43846359 tttcaa 43846364  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 3434791 - 3434835
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcat 213  Q
    |||||| ||||||||||||||||| ||||| |||| |||||||||    
T  3434791 tttttgctcattcccatcaaaatagccgagcgtgaattaactcat 3434835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 38006586 - 38006618
Alignment:
Q  260 aacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||| |||||||||||||||||||||||||||    
T  38006586 aacgggaatgagcaaaaacagatgggagaagag 38006618  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 3644753 - 3644876
Alignment:
Q  167 tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaa 266  Q
    |||||||| |||||| | ||||||||    || ||||||||||| |||||  | |||| |||||||||||||||| ||| |  | ||||| ||| |||||    
T  3644753 tatttttgctcattctcgtcaaaatagttaagcgtgagttaacttatgcaggtgtattttcagtgtgagttaacttacacatgtctatttctcagcggaa 3644852  T
Q  267 atgagcaaaaacagatgggagaag 290  Q
    |||||||||| |||||||||||||    
T  3644853 atgagcaaaatcagatgggagaag 3644876  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 40355900 - 40356007
Alignment:
Q  185 tcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgg 284  Q
    |||||||| ||||| ||||||||||||||| | || |||| |||| |||||||||| |||  | |||||||| | |||| ||| |||||||| |||||||    
T  40355900 tcaaaatagccgagcgtgagttaactcatgtagatgtattttcagcgtgagttaacccacgcagatgtatttcttaacgaaaacgagcaaaagcagatgg 40355999  T
Q  285 gagaagag 292  Q
     |||||||    
T  40356000 aagaagag 40356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 35310499 - 35310401
Alignment:
Q  147 gagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcac 244  Q
    ||||||| ||| ||| |||| |||||||| |||| ||| |||||||| ||||| |||||||||||||  ||  | ||||||||||||||||||||||||    
T  35310499 gagtaccgctcatctcccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaactcacacaggtgtattctcagtgtgagttaactcac 35310401  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 20991575 - 20991697
Alignment:
Q  170 ttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatg 269  Q
    ||||| |||||||| |||||||| ||||| |||||||||| ||  ||  | |||| |||| ||||||||||||||  | |||||| | ||| | |  |||    
T  20991575 ttttgctcattcccgtcaaaatagccgagcgtgagttaacccacacaggtgtattgtcagcgtgagttaactcacgcagatgtatctctcagcagggatg 20991674  T
Q  270 agcaaaaacagatgggagaagag 292  Q
    ||||||| |||||||||||||||    
T  20991675 agcaaaaccagatgggagaagag 20991697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 32535621 - 32535579
Alignment:
Q  250 tgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||||  ||||||||||||||||||| |||||||    
T  32535621 tgtatttttcaacgtgaatgagcaaaaacagatggaagaagag 32535579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 31756929 - 31756779
Alignment:
Q  145 ttgagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtga--gttaactcatgcatatttattctcagtgtgagttaact 241  Q
    |||| |||||||||||| |||| | |||||| ||||| || | ||||||   ||||||||  ||||||||| ||| || ||||||||| |||||||||||    
T  31756929 ttgaataccactcttctcccatctgtttttgctcatttccgtaaaaatagttgagtgtgatagttaactcacgcagatatattctcagcgtgagttaact 31756830  T
Q  242 cacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 292  Q
    ||   |  |||||||||||   | |||||||||||| ||||||||||||||    
T  31756829 catgcaggtgtatttttcagtcggaatgagcaaaaatagatgggagaagag 31756779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 3756397 - 3756471
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactca 243  Q
    |||||| |||||||| ||||||||  ||||||||||||||||| ||||  |  |||||||| |||||||||||||    
T  3756397 tttttgctcattcccgtcaaaatagtcgagtgtgagttaactcgtgcaagtggattctcagcgtgagttaactca 3756471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 31756888 - 31756919
Alignment:
Q  261 acggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||||||||||||||||||||||    
T  31756888 acggaaatgagcaaaaacagatgggagaagag 31756919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 6620025 - 6620143
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaat 268  Q
    |||||| |||||||| ||||||||   ||| |||||||||||||||||  | ||||||| || |||||||||||||  ||  |||||| |||    ||||    
T  6620025 tttttgctcattcccgtcaaaatagttgagcgtgagttaactcatgcaggtgtattctctgtatgagttaactcacgcaa--gtatttctcagtaaaaat 6620122  T
Q  269 gagcaaaaacagatgggagaa 289  Q
    |||||||||||||| ||||||    
T  6620123 gagcaaaaacagataggagaa 6620143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 8514054 - 8514085
Alignment:
Q  261 acggaaatgagcaaaaacagatgggagaagag 292  Q
    ||||||||||||||||||||||||||||||||    
T  8514054 acggaaatgagcaaaaacagatgggagaagag 8514085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 130787 - 130712
Alignment:
Q  169 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattct-cagtgtgagttaactcac 244  Q
    ||||||||||||||| ||||| |||||||  ||||||||||||| |||  | |||| | ||||||||||||||||||    
T  130787 tttttgttcattcccgtcaaa-taaccgaacgtgagttaactcacgcaggtgtatttttcagtgtgagttaactcac 130712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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