View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5032-Insertion-8 (Length: 477)
Name: NF5032-Insertion-8
Description: NF5032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5032-Insertion-8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 38 - 468
Target Start/End: Complemental strand, 41619805 - 41619375
Alignment:
| Q |
38 |
gcaacgaccgaaggatggtgacggtttacttattgatagtggtggcaatggtgcttgtggtggcgtggttcatgaccacgaaggcatgttcttcgttggt |
137 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41619805 |
gcaaagacagaaggatggtgacggtttagttattgatagcggtggcaatgttgcttgtggtggcgtggttcatgaccacgaaggcatgttcttcattggt |
41619706 |
T |
|
| Q |
138 |
ttttcttgcttcatgttctattgaatcacatacatttgaaacaatgtagatagagctgtcaatttaagtgaccttaacaatttgatctccaactccaata |
237 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41619705 |
ttttcttacttcatgttctactgaatcacatacatttgaagcaatgtagatagagctgtcaatttaagtgaccttaacaatttgatctccaactccagta |
41619606 |
T |
|
| Q |
238 |
ccatgggggcttaaaatattctaagtgaatgaacccattttttataagccccaaaatagtagatgctagaagttggtagtaatggaatccgtccatgttt |
337 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41619605 |
tcatgggggcttaaaatattcgaagtgaatgaacccattttttataagccccaaaatagtagatgctagaagttggtagtaatggaatccgtccatgttt |
41619506 |
T |
|
| Q |
338 |
tgaattggcgagttaaacactaggtcttcttaaccgtttgtgaaggtgtaaggtgcgatatatttctagcggagagtcagagaggattatatttgtgaaa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
41619505 |
tgaattggcgagttaaacactaggtcttcttaaccgtttgtgaaggtgtaaggtgcgacatatttccagcggagagtcaaagaggattatatttgtgaag |
41619406 |
T |
|
| Q |
438 |
tttggtcttagttcacctttgactagtcata |
468 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
41619405 |
tttggccttagttcacctttgactagtcata |
41619375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 30366074 - 30365977
Alignment:
| Q |
196 |
tcaatttaagtgaccttaacaatttgatctccaactccaataccatgggggcttaaaatattctaagtgaatga-acccattttttataagccccaaa |
292 |
Q |
| |
|
|||||||| | ||||||||||||||| | | ||||||||| || |||||| |||||||||| |||| ||||| |||||||||||| || |||||| |
|
|
| T |
30366074 |
tcaatttatgggaccttaacaatttggcccctaactccaatgtcaagggggcctaaaatattccaagttaatgagccccattttttattagtcccaaa |
30365977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University